diff --git a/Demo/Makefile.am b/Demo/Makefile.am new file mode 100644 --- /dev/null +++ b/Demo/Makefile.am @@ -0,0 +1,115 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + README.txt \ + qrdemo_out.txt \ + qrdemoc_out.txt + +check_PROGRAMS = \ + qrsimple \ + qrsimplec \ + qrdemo \ + qrdemoc + +qrsimple_SOURCES = qrsimple.cpp +qrsimple_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) + +qrsimplec_SOURCES = qrsimplec.c +qrsimplec_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) + +qrdemo_SOURCES = qrdemo.cpp +qrdemo_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) + +qrdemoc_SOURCES = qrdemoc.c +qrdemoc_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) + +MATRICES = \ + $(top_srcdir)/Matrix/GD01_b.mtx \ + $(top_srcdir)/Matrix/GD06_theory.mtx \ + $(top_srcdir)/Matrix/GD98_a.mtx \ + $(top_srcdir)/Matrix/LFAT5.mtx \ + $(top_srcdir)/Matrix/Ragusa16.mtx \ + $(top_srcdir)/Matrix/Tina_AskCal.mtx \ + $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \ + $(top_srcdir)/Matrix/a0.mtx \ + $(top_srcdir)/Matrix/a04.mtx \ + $(top_srcdir)/Matrix/a1.mtx \ + $(top_srcdir)/Matrix/a2.mtx \ + $(top_srcdir)/Matrix/a4.mtx \ + $(top_srcdir)/Matrix/ash219.mtx \ + $(top_srcdir)/Matrix/b1_ss.mtx \ + $(top_srcdir)/Matrix/bcspwr01.mtx \ + $(top_srcdir)/Matrix/bfwa62.mtx \ + $(top_srcdir)/Matrix/c2.mtx \ + $(top_srcdir)/Matrix/c32.mtx \ + $(top_srcdir)/Matrix/lfat5b.mtx \ + $(top_srcdir)/Matrix/lp_share1b.mtx \ + $(top_srcdir)/Matrix/lpi_galenet.mtx \ + $(top_srcdir)/Matrix/lpi_itest6.mtx \ + $(top_srcdir)/Matrix/r2.mtx \ + $(top_srcdir)/Matrix/s32.mtx \ + $(top_srcdir)/Matrix/west0067.mtx \ + $(top_srcdir)/Matrix/young1c.mtx \ + $(top_srcdir)/Matrix/lp_e226_transposed.mtx + +check-local: $(check_PROGRAMS) $(MATRICES) + -./qrsimple < $(top_srcdir)/Matrix/ash219.mtx + -./qrsimplec < $(top_srcdir)/Matrix/ash219.mtx + -./qrsimple < $(top_srcdir)/Matrix/west0067.mtx + -./qrsimplec < $(top_srcdir)/Matrix/west0067.mtx + -./qrdemo < $(top_srcdir)/Matrix/a2.mtx + -./qrdemo < $(top_srcdir)/Matrix/r2.mtx + -./qrdemo < $(top_srcdir)/Matrix/a04.mtx + -./qrdemo < $(top_srcdir)/Matrix/a2.mtx + -./qrdemo < $(top_srcdir)/Matrix/west0067.mtx + -./qrdemo < $(top_srcdir)/Matrix/c2.mtx + -./qrdemo < $(top_srcdir)/Matrix/a0.mtx + -./qrdemo < $(top_srcdir)/Matrix/lfat5b.mtx + -./qrdemo < $(top_srcdir)/Matrix/bfwa62.mtx + -./qrdemo < $(top_srcdir)/Matrix/LFAT5.mtx + -./qrdemo < $(top_srcdir)/Matrix/b1_ss.mtx + -./qrdemo < $(top_srcdir)/Matrix/bcspwr01.mtx + -./qrdemo < $(top_srcdir)/Matrix/lpi_galenet.mtx + -./qrdemo < $(top_srcdir)/Matrix/lpi_itest6.mtx + -./qrdemo < $(top_srcdir)/Matrix/ash219.mtx + -./qrdemo < $(top_srcdir)/Matrix/a4.mtx + -./qrdemo < $(top_srcdir)/Matrix/s32.mtx + -./qrdemo < $(top_srcdir)/Matrix/c32.mtx + -./qrdemo < $(top_srcdir)/Matrix/lp_share1b.mtx + -./qrdemo < $(top_srcdir)/Matrix/a1.mtx + -./qrdemo < $(top_srcdir)/Matrix/GD06_theory.mtx + -./qrdemo < $(top_srcdir)/Matrix/GD01_b.mtx + -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx + -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal.mtx + -./qrdemo < $(top_srcdir)/Matrix/GD98_a.mtx + -./qrdemo < $(top_srcdir)/Matrix/Ragusa16.mtx + -./qrdemo < $(top_srcdir)/Matrix/young1c.mtx + -./qrdemo < $(top_srcdir)/Matrix/lp_e226_transposed.mtx + -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx + -./qrdemoc < $(top_srcdir)/Matrix/r2.mtx + -./qrdemoc < $(top_srcdir)/Matrix/a04.mtx + -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx + -./qrdemoc < $(top_srcdir)/Matrix/west0067.mtx + -./qrdemoc < $(top_srcdir)/Matrix/c2.mtx + -./qrdemoc < $(top_srcdir)/Matrix/a0.mtx + -./qrdemoc < $(top_srcdir)/Matrix/lfat5b.mtx + -./qrdemoc < $(top_srcdir)/Matrix/bfwa62.mtx + -./qrdemoc < $(top_srcdir)/Matrix/LFAT5.mtx + -./qrdemoc < $(top_srcdir)/Matrix/b1_ss.mtx + -./qrdemoc < $(top_srcdir)/Matrix/bcspwr01.mtx + -./qrdemoc < $(top_srcdir)/Matrix/lpi_galenet.mtx + -./qrdemoc < $(top_srcdir)/Matrix/lpi_itest6.mtx + -./qrdemoc < $(top_srcdir)/Matrix/ash219.mtx + -./qrdemoc < $(top_srcdir)/Matrix/a4.mtx + -./qrdemoc < $(top_srcdir)/Matrix/s32.mtx + -./qrdemoc < $(top_srcdir)/Matrix/c32.mtx + -./qrdemoc < $(top_srcdir)/Matrix/lp_share1b.mtx + -./qrdemoc < $(top_srcdir)/Matrix/a1.mtx + -./qrdemoc < $(top_srcdir)/Matrix/GD06_theory.mtx + -./qrdemoc < $(top_srcdir)/Matrix/GD01_b.mtx + -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx + -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal.mtx + -./qrdemoc < $(top_srcdir)/Matrix/GD98_a.mtx + -./qrdemoc < $(top_srcdir)/Matrix/Ragusa16.mtx + -./qrdemoc < $(top_srcdir)/Matrix/young1c.mtx + -./qrdemoc < $(top_srcdir)/Matrix/lp_e226_transposed.mtx diff --git a/Doc/Makefile.am b/Doc/Makefile.am new file mode 100644 --- /dev/null +++ b/Doc/Makefile.am @@ -0,0 +1,29 @@ +EXTRA_DIST = \ + ChangeLog \ + License.txt \ + README.txt \ + gpl.txt + +dist_noinst_DATA = \ + spqr_user_guide.tex \ + spqr_user_guide.bib + +dist_pdf_DATA = \ + spqr_user_guide.pdf \ + algo_spqr.pdf \ + spqr.pdf + +TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error +BIB = BIBINPUTS="$(srcdir):" bibtex +%.pdf: %.tex %.bbl + $(TEX) $* + while grep -q "Rerun to get cross-references right" $*.log; do \ + $(TEX) $*; \ + done +%.bbl: %.aux %.bib + $(BIB) $* +%.aux: %.tex + $(TEX) $* + +CLEANFILES = *.aux *.bbl *.blg *.log *.toc +MAINTAINERCLEANFILES = $(dist_pdf_DATA) diff --git a/Include/Makefile.am b/Include/Makefile.am new file mode 100644 --- /dev/null +++ b/Include/Makefile.am @@ -0,0 +1,5 @@ +pkginclude_HEADERS = \ + SuiteSparseQR.hpp \ + SuiteSparseQR_C.h \ + SuiteSparseQR_definitions.h \ + spqr.hpp diff --git a/Makefile.am b/Makefile.am new file mode 100644 --- /dev/null +++ b/Makefile.am @@ -0,0 +1,9 @@ +ACLOCAL_AMFLAGS = -I m4 + +SUBDIRS = Include Source Matrix Demo Tcov Doc +EXTRA_DIST = README.txt + +pkgconfig_DATA = spqr.pc + +CODE_COVERAGE_BRANCH_COVERAGE = 1 +@CODE_COVERAGE_RULES@ diff --git a/Matrix/Makefile.am b/Matrix/Makefile.am new file mode 100644 --- /dev/null +++ b/Matrix/Makefile.am @@ -0,0 +1,36 @@ +EXTRA_DIST = \ + README.txt + +dist_noinst_DATA = \ + GD01_b.mtx \ + GD06_theory.mtx \ + GD98_a.mtx \ + LFAT5.mtx \ + Ragusa16.mtx \ + Tina_AskCal.mtx \ + Tina_AskCal_perm.mtx \ + a0.mtx \ + a04.mtx \ + a1.mtx \ + a2.mtx \ + a4.mtx \ + arrow.mtx \ + ash219.mtx \ + b1_ss.mtx \ + bcspwr01.mtx \ + bfwa62.mtx \ + c2.mtx \ + c32.mtx \ + lfat5b.mtx \ + lp_share1b.mtx \ + lpi_galenet.mtx \ + lpi_itest6.mtx \ + pwr01b.mtx \ + r2.mtx \ + s32.mtx \ + west0067.mtx \ + young1c.mtx \ + Franz6_id1959_aug.mtx \ + Groebner_id2003_aug.mtx \ + lp_e226.mtx \ + lp_e226_transposed.mtx diff --git a/Source/Makefile.am b/Source/Makefile.am new file mode 100644 --- /dev/null +++ b/Source/Makefile.am @@ -0,0 +1,56 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(TBB_CFLAGS) $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) +if !EXPERT +AM_CPPFLAGS += -DNEXPERT +endif +if TBB +AM_CPPFLAGS += -DHAVE_TBB +endif + +lib_LTLIBRARIES = libspqr.la + +libspqr_la_SOURCES = \ + SuiteSparseQR.cpp \ + SuiteSparseQR_C.cpp \ + SuiteSparseQR_expert.cpp \ + SuiteSparseQR_qmult.cpp \ + spqr_1colamd.cpp \ + spqr_1factor.cpp \ + spqr_1fixed.cpp \ + spqr_analyze.cpp \ + spqr_append.cpp \ + spqr_assemble.cpp \ + spqr_cpack.cpp \ + spqr_csize.cpp \ + spqr_cumsum.cpp \ + spqr_debug.cpp \ + spqr_factorize.cpp \ + spqr_fcsize.cpp \ + spqr_freefac.cpp \ + spqr_freenum.cpp \ + spqr_freesym.cpp \ + spqr_front.cpp \ + spqr_fsize.cpp \ + spqr_happly.cpp \ + spqr_happly_work.cpp \ + spqr_hpinv.cpp \ + spqr_kernel.cpp \ + spqr_larftb.cpp \ + spqr_maxcolnorm.cpp \ + spqr_panel.cpp \ + spqr_parallel.cpp \ + spqr_rconvert.cpp \ + spqr_rcount.cpp \ + spqr_rhpack.cpp \ + spqr_rmap.cpp \ + spqr_rsolve.cpp \ + spqr_shift.cpp \ + spqr_stranspose1.cpp \ + spqr_stranspose2.cpp \ + spqr_tol.cpp \ + spqr_trapezoidal.cpp \ + spqr_type.cpp + +libspqr_la_LIBADD = $(TBB_LIBS) $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS) $(LAPACK_LIBS) $(BLAS_LIBS) -lm $(CODE_COVERAGE_LIBS) +libspqr_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libspqr_la_CXXFLAGS = $(AM_CXXFLAGS) $(CODE_COVERAGE_CXXFLAGS) +libspqr_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION) diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am new file mode 100644 --- /dev/null +++ b/Tcov/Makefile.am @@ -0,0 +1,52 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + README.txt + +dist_noinst_DATA = \ + matrix1.txt \ + matrixlist.txt + +if CODE_COVERAGE_ENABLED +check_PROGRAMS = \ + qrtest + +qrtest_SOURCES = qrtestc.c qrtest.cpp +qrtest_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS) + +MATRICES = \ + $(srcdir)/matrix1.txt \ + $(srcdir)/matrixlist.txt \ + $(top_srcdir)/Matrix/GD01_b.mtx \ + $(top_srcdir)/Matrix/GD06_theory.mtx \ + $(top_srcdir)/Matrix/GD98_a.mtx \ + $(top_srcdir)/Matrix/LFAT5.mtx \ + $(top_srcdir)/Matrix/Ragusa16.mtx \ + $(top_srcdir)/Matrix/Tina_AskCal.mtx \ + $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \ + $(top_srcdir)/Matrix/a0.mtx \ + $(top_srcdir)/Matrix/a04.mtx \ + $(top_srcdir)/Matrix/a1.mtx \ + $(top_srcdir)/Matrix/a2.mtx \ + $(top_srcdir)/Matrix/a4.mtx \ + $(top_srcdir)/Matrix/arrow.mtx \ + $(top_srcdir)/Matrix/ash219.mtx \ + $(top_srcdir)/Matrix/b1_ss.mtx \ + $(top_srcdir)/Matrix/bcspwr01.mtx \ + $(top_srcdir)/Matrix/bfwa62.mtx \ + $(top_srcdir)/Matrix/c2.mtx \ + $(top_srcdir)/Matrix/c32.mtx \ + $(top_srcdir)/Matrix/lfat5b.mtx \ + $(top_srcdir)/Matrix/lp_share1b.mtx \ + $(top_srcdir)/Matrix/lpi_galenet.mtx \ + $(top_srcdir)/Matrix/lpi_itest6.mtx \ + $(top_srcdir)/Matrix/r2.mtx \ + $(top_srcdir)/Matrix/s32.mtx \ + $(top_srcdir)/Matrix/west0067.mtx + +check-local: $(check_PROGRAMS) $(MATRICES) + ./qrtest $(srcdir)/matrixlist.txt > qrtest_out.txt + ./qrtest $(srcdir)/matrix1.txt > qrtest_out1.txt +endif + +CLEANFILES = qrtest_out.txt qrtest_out1.txt diff --git a/configure.ac b/configure.ac new file mode 100644 --- /dev/null +++ b/configure.ac @@ -0,0 +1,119 @@ +# -*- Autoconf -*- +# Process this file with autoconf to produce a configure script. + +AC_PREREQ([2.69]) +AC_INIT([SPQR],[2.0.9],[https://github.com/DrTimothyAldenDavis/SuiteSparse],[spqr],[http://www.suitesparse.com/]) +AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp]) +AC_CONFIG_AUX_DIR([build-aux]) +AC_CONFIG_MACRO_DIR([m4]) +AC_CONFIG_HEADERS([config.h]) +AM_INIT_AUTOMAKE([foreign]) +AM_SILENT_RULES([yes]) +LT_INIT([disable-static]) + +# Checks for programs. +PKG_PROG_PKG_CONFIG +AC_PROG_INSTALL +AC_PROG_F77 +AC_PROG_CC +AC_PROG_CXX +AC_LANG([C++]) +AX_CODE_COVERAGE + +AC_ARG_ENABLE([expert], + [AS_HELP_STRING( + [--disable-expert], + [compile without the min 2-norm solution option])], + [], + [AS_VAR_SET([enable_expert], [yes])]) + +AC_ARG_WITH([tbb], + [AS_HELP_STRING( + [--without-tbb], + [do not use Intel Threading Building Blocks for multithreading])], + [], + [AS_VAR_SET([with_tbb], [yes])]) + +AS_VAR_SET([LIBS_SAVED], [$LIBS]) + +# Checks for libraries. +AC_CHECK_LIB([m], [sqrt]) + +AX_BLAS( + [], + [AC_MSG_ERROR([cannot find BLAS])]) + +AX_LAPACK( + [], + [AC_MSG_ERROR([cannot find LAPACK])]) + +PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig]) +PKG_CHECK_MODULES([CHOLMOD], [cholmod]) + +# Checks for header files. +AC_CHECK_HEADERS([float.h stdlib.h]) + +AS_IF([test "x$with_tbb" = "xyes"], [ + AC_CHECK_HEADERS([tbb/task_scheduler_init.h tbb/task.h]) +]) + +# Checks for typedefs, structures, and compiler characteristics. +AC_TYPE_SIZE_T + +# Checks for library functions. +AC_CHECK_FUNCS([sqrt]) + +AS_VAR_SET([LIBS], [$LIBS_SAVED]) + +AS_IF([test "x$with_tbb" = "xyes"], [ + AC_SUBST([TBB_CFLAGS], [""]) + AC_SUBST([TBB_LIBS], ["-ltbb"]) +]) + +AC_MSG_CHECKING([whether to use expert routines]) +AC_MSG_RESULT([$enable_expert]) +AM_CONDITIONAL([EXPERT], [test "x$enable_expert" = "xyes"]) + +AC_MSG_CHECKING([whether to use Intel Threading Building Blocks]) +AC_MSG_RESULT([$with_tbb]) +AM_CONDITIONAL([TBB], [test "x$with_tbb" = "xyes"]) + +m4_ifdef([PKG_INSTALLDIR], [PKG_INSTALLDIR], [AC_SUBST([pkgconfigdir], [${libdir}/pkgconfig])]) +AC_CONFIG_FILES([ + spqr.pc + Makefile + Demo/Makefile + Doc/Makefile + Include/Makefile + Matrix/Makefile + Source/Makefile + Tcov/Makefile +]) +#AC_CONFIG_LINKS([Matrix:Matrix]) # Can't link an entire directory? +AC_CONFIG_LINKS([Matrix/GD01_b.mtx:Matrix/GD01_b.mtx]) +AC_CONFIG_LINKS([Matrix/GD06_theory.mtx:Matrix/GD06_theory.mtx]) +AC_CONFIG_LINKS([Matrix/GD98_a.mtx:Matrix/GD98_a.mtx]) +AC_CONFIG_LINKS([Matrix/LFAT5.mtx:Matrix/LFAT5.mtx]) +AC_CONFIG_LINKS([Matrix/Ragusa16.mtx:Matrix/Ragusa16.mtx]) +AC_CONFIG_LINKS([Matrix/Tina_AskCal.mtx:Matrix/Tina_AskCal.mtx]) +AC_CONFIG_LINKS([Matrix/Tina_AskCal_perm.mtx:Matrix/Tina_AskCal_perm.mtx]) +AC_CONFIG_LINKS([Matrix/a0.mtx:Matrix/a0.mtx]) +AC_CONFIG_LINKS([Matrix/a04.mtx:Matrix/a04.mtx]) +AC_CONFIG_LINKS([Matrix/a1.mtx:Matrix/a1.mtx]) +AC_CONFIG_LINKS([Matrix/a2.mtx:Matrix/a2.mtx]) +AC_CONFIG_LINKS([Matrix/a4.mtx:Matrix/a4.mtx]) +AC_CONFIG_LINKS([Matrix/arrow.mtx:Matrix/arrow.mtx]) +AC_CONFIG_LINKS([Matrix/ash219.mtx:Matrix/ash219.mtx]) +AC_CONFIG_LINKS([Matrix/b1_ss.mtx:Matrix/b1_ss.mtx]) +AC_CONFIG_LINKS([Matrix/bcspwr01.mtx:Matrix/bcspwr01.mtx]) +AC_CONFIG_LINKS([Matrix/bfwa62.mtx:Matrix/bfwa62.mtx]) +AC_CONFIG_LINKS([Matrix/c2.mtx:Matrix/c2.mtx]) +AC_CONFIG_LINKS([Matrix/c32.mtx:Matrix/c32.mtx]) +AC_CONFIG_LINKS([Matrix/lfat5b.mtx:Matrix/lfat5b.mtx]) +AC_CONFIG_LINKS([Matrix/lp_share1b.mtx:Matrix/lp_share1b.mtx]) +AC_CONFIG_LINKS([Matrix/lpi_galenet.mtx:Matrix/lpi_galenet.mtx]) +AC_CONFIG_LINKS([Matrix/lpi_itest6.mtx:Matrix/lpi_itest6.mtx]) +AC_CONFIG_LINKS([Matrix/r2.mtx:Matrix/r2.mtx]) +AC_CONFIG_LINKS([Matrix/s32.mtx:Matrix/s32.mtx]) +AC_CONFIG_LINKS([Matrix/west0067.mtx:Matrix/west0067.mtx]) +AC_OUTPUT diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4 new file mode 100644 --- /dev/null +++ b/m4/ax_blas.m4 @@ -0,0 +1,241 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_blas.html +# =========================================================================== +# +# SYNOPSIS +# +# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) +# +# DESCRIPTION +# +# This macro looks for a library that implements the BLAS linear-algebra +# interface (see http://www.netlib.org/blas/). On success, it sets the +# BLAS_LIBS output variable to hold the requisite library linkages. +# +# To link with BLAS, you should link with: +# +# $BLAS_LIBS $LIBS $FLIBS +# +# in that order. FLIBS is the output variable of the +# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is +# sometimes necessary in order to link with F77 libraries. Users will also +# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same +# reason. +# +# Many libraries are searched for, from ATLAS to CXML to ESSL. The user +# may also use --with-blas= in order to use some specific BLAS +# library . In order to link successfully, however, be aware that you +# will probably need to use the same Fortran compiler (which can be set +# via the F77 env. var.) as was used to compile the BLAS library. +# +# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is +# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is +# not found. If ACTION-IF-FOUND is not specified, the default action will +# define HAVE_BLAS. +# +# LICENSE +# +# Copyright (c) 2008 Steven G. Johnson +# Copyright (c) 2019 Geoffrey M. Oxberry +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the +# Free Software Foundation, either version 3 of the License, or (at your +# option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General +# Public License for more details. +# +# You should have received a copy of the GNU General Public License along +# with this program. If not, see . +# +# As a special exception, the respective Autoconf Macro's copyright owner +# gives unlimited permission to copy, distribute and modify the configure +# scripts that are the output of Autoconf when processing the Macro. You +# need not follow the terms of the GNU General Public License when using +# or distributing such scripts, even though portions of the text of the +# Macro appear in them. The GNU General Public License (GPL) does govern +# all other use of the material that constitutes the Autoconf Macro. +# +# This special exception to the GPL applies to versions of the Autoconf +# Macro released by the Autoconf Archive. When you make and distribute a +# modified version of the Autoconf Macro, you may extend this special +# exception to the GPL to apply to your modified version as well. + +#serial 17 + +AU_ALIAS([ACX_BLAS], [AX_BLAS]) +AC_DEFUN([AX_BLAS], [ +AC_PREREQ([2.55]) +AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS]) +AC_REQUIRE([AC_CANONICAL_HOST]) +ax_blas_ok=no + +AC_ARG_WITH(blas, + [AS_HELP_STRING([--with-blas=], [use BLAS library ])]) +case $with_blas in + yes | "") ;; + no) ax_blas_ok=disable ;; + -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o) + BLAS_LIBS="$with_blas" + ;; + *) BLAS_LIBS="-l$with_blas" ;; +esac + +# Get fortran linker names of BLAS functions to check for. +AC_F77_FUNC(sgemm) +AC_F77_FUNC(dgemm) + +ax_blas_save_LIBS="$LIBS" +LIBS="$LIBS $FLIBS" + +# First, check BLAS_LIBS environment variable +if test $ax_blas_ok = no; then +if test "x$BLAS_LIBS" != x; then + save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" + AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes], [BLAS_LIBS=""]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi +fi + +# BLAS linked to by default? (happens on some supercomputers) +if test $ax_blas_ok = no; then + save_LIBS="$LIBS"; LIBS="$LIBS" + AC_MSG_CHECKING([if $sgemm is being linked in already]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi + +# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes + BLAS_LIBS="-lopenblas"]) +fi + +# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(atlas, ATL_xerbla, + [AC_CHECK_LIB(f77blas, $sgemm, + [AC_CHECK_LIB(cblas, cblas_dgemm, + [ax_blas_ok=yes + BLAS_LIBS="-lcblas -lf77blas -latlas"], + [], [-lf77blas -latlas])], + [], [-latlas])]) +fi + +# BLAS in PhiPACK libraries? (requires generic BLAS lib, too) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(blas, $sgemm, + [AC_CHECK_LIB(dgemm, $dgemm, + [AC_CHECK_LIB(sgemm, $sgemm, + [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"], + [], [-lblas])], + [], [-lblas])]) +fi + +# BLAS in Intel MKL library? +if test $ax_blas_ok = no; then + # MKL for gfortran + if test x"$ac_cv_fc_compiler_gnu" = xyes; then + # 64 bit + if test $host_cpu = x86_64; then + AC_CHECK_LIB(mkl_gf_lp64, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread]) + # 32 bit + elif test $host_cpu = i686; then + AC_CHECK_LIB(mkl_gf, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread]) + fi + # MKL for other compilers (Intel, PGI, ...?) + else + # 64-bit + if test $host_cpu = x86_64; then + AC_CHECK_LIB(mkl_intel_lp64, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread]) + # 32-bit + elif test $host_cpu = i686; then + AC_CHECK_LIB(mkl_intel, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread]) + fi + fi +fi +# Old versions of MKL +if test $ax_blas_ok = no; then + AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread]) +fi + +# BLAS in Apple vecLib library? +if test $ax_blas_ok = no; then + save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS" + AC_MSG_CHECKING([for $sgemm in -framework vecLib]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi + +# BLAS in Alpha CXML library? +if test $ax_blas_ok = no; then + AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"]) +fi + +# BLAS in Alpha DXML library? (now called CXML, see above) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"]) +fi + +# BLAS in Sun Performance library? +if test $ax_blas_ok = no; then + if test "x$GCC" != xyes; then # only works with Sun CC + AC_CHECK_LIB(sunmath, acosp, + [AC_CHECK_LIB(sunperf, $sgemm, + [BLAS_LIBS="-xlic_lib=sunperf -lsunmath" + ax_blas_ok=yes],[],[-lsunmath])]) + fi +fi + +# BLAS in SCSL library? (SGI/Cray Scientific Library) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"]) +fi + +# BLAS in SGIMATH library? +if test $ax_blas_ok = no; then + AC_CHECK_LIB(complib.sgimath, $sgemm, + [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"]) +fi + +# BLAS in IBM ESSL library? (requires generic BLAS lib, too) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(blas, $sgemm, + [AC_CHECK_LIB(essl, $sgemm, + [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"], + [], [-lblas $FLIBS])]) +fi + +# Generic BLAS library? +if test $ax_blas_ok = no; then + AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"]) +fi + +AC_SUBST(BLAS_LIBS) + +LIBS="$ax_blas_save_LIBS" + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x"$ax_blas_ok" = xyes; then + ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1]) + : +else + ax_blas_ok=no + $2 +fi +])dnl AX_BLAS diff --git a/m4/ax_code_coverage.m4 b/m4/ax_code_coverage.m4 new file mode 100644 --- /dev/null +++ b/m4/ax_code_coverage.m4 @@ -0,0 +1,271 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_code_coverage.html +# =========================================================================== +# +# SYNOPSIS +# +# AX_CODE_COVERAGE() +# +# DESCRIPTION +# +# Defines CODE_COVERAGE_CPPFLAGS, CODE_COVERAGE_CFLAGS, +# CODE_COVERAGE_CXXFLAGS and CODE_COVERAGE_LIBS which should be included +# in the CPPFLAGS, CFLAGS CXXFLAGS and LIBS/LIBADD variables of every +# build target (program or library) which should be built with code +# coverage support. Also defines CODE_COVERAGE_RULES which should be +# substituted in your Makefile; and $enable_code_coverage which can be +# used in subsequent configure output. CODE_COVERAGE_ENABLED is defined +# and substituted, and corresponds to the value of the +# --enable-code-coverage option, which defaults to being disabled. +# +# Test also for gcov program and create GCOV variable that could be +# substituted. +# +# Note that all optimization flags in CFLAGS must be disabled when code +# coverage is enabled. +# +# Usage example: +# +# configure.ac: +# +# AX_CODE_COVERAGE +# +# Makefile.am: +# +# @CODE_COVERAGE_RULES@ +# my_program_LIBS = ... $(CODE_COVERAGE_LIBS) ... +# my_program_CPPFLAGS = ... $(CODE_COVERAGE_CPPFLAGS) ... +# my_program_CFLAGS = ... $(CODE_COVERAGE_CFLAGS) ... +# my_program_CXXFLAGS = ... $(CODE_COVERAGE_CXXFLAGS) ... +# +# This results in a "check-code-coverage" rule being added to any +# Makefile.am which includes "@CODE_COVERAGE_RULES@" (assuming the module +# has been configured with --enable-code-coverage). Running `make +# check-code-coverage` in that directory will run the module's test suite +# (`make check`) and build a code coverage report detailing the code which +# was touched, then print the URI for the report. +# +# In earlier versions of this macro, CODE_COVERAGE_LDFLAGS was defined +# instead of CODE_COVERAGE_LIBS. They are both still defined, but use of +# CODE_COVERAGE_LIBS is preferred for clarity; CODE_COVERAGE_LDFLAGS is +# deprecated. They have the same value. +# +# This code was derived from Makefile.decl in GLib, originally licenced +# under LGPLv2.1+. +# +# LICENSE +# +# Copyright (c) 2012, 2016 Philip Withnall +# Copyright (c) 2012 Xan Lopez +# Copyright (c) 2012 Christian Persch +# Copyright (c) 2012 Paolo Borelli +# Copyright (c) 2012 Dan Winship +# Copyright (c) 2015 Bastien ROUCARIES +# +# This library is free software; you can redistribute it and/or modify it +# under the terms of the GNU Lesser General Public License as published by +# the Free Software Foundation; either version 2.1 of the License, or (at +# your option) any later version. +# +# This library is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser +# General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program. If not, see . + +#serial 27 + +AC_DEFUN([_AX_CODE_COVERAGE_ENABLED],[ + # check for gcov + AC_CHECK_TOOL([GCOV], + [$_AX_CODE_COVERAGE_GCOV_PROG_WITH], + [:]) + AS_IF([test "X$GCOV" = "X:"], + [AC_MSG_ERROR([gcov is needed to do coverage])]) + AC_SUBST([GCOV]) + + dnl Check if gcc is being used + AS_IF([ test "$GCC" = "no" ], [ + AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage]) + ]) + + AC_CHECK_PROG([LCOV], [lcov], [lcov]) + AC_CHECK_PROG([GENHTML], [genhtml], [genhtml]) + + AS_IF([ test x"$LCOV" = x ], [ + AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed]) + ]) + + AS_IF([ test x"$GENHTML" = x ], [ + AC_MSG_ERROR([Could not find genhtml from the lcov package]) + ]) + + dnl Build the code coverage flags + dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility + CODE_COVERAGE_CPPFLAGS="-DNDEBUG" + CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" + CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" + CODE_COVERAGE_LIBS="-lgcov" + CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS" + + AC_SUBST([CODE_COVERAGE_CPPFLAGS]) + AC_SUBST([CODE_COVERAGE_CFLAGS]) + AC_SUBST([CODE_COVERAGE_CXXFLAGS]) + AC_SUBST([CODE_COVERAGE_LIBS]) + AC_SUBST([CODE_COVERAGE_LDFLAGS]) + + [CODE_COVERAGE_RULES_CHECK=' + -$(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) -k check + $(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) code-coverage-capture +'] + [CODE_COVERAGE_RULES_CAPTURE=' + $(code_coverage_v_lcov_cap)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --capture --output-file "$(CODE_COVERAGE_OUTPUT_FILE).tmp" --test-name "$(call code_coverage_sanitize,$(PACKAGE_NAME)-$(PACKAGE_VERSION))" --no-checksum --compat-libtool $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_OPTIONS) + $(code_coverage_v_lcov_ign)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --remove "$(CODE_COVERAGE_OUTPUT_FILE).tmp" "/tmp/*" $(CODE_COVERAGE_IGNORE_PATTERN) --output-file "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_RMOPTS) + -@rm -f $(CODE_COVERAGE_OUTPUT_FILE).tmp + $(code_coverage_v_genhtml)LANG=C $(GENHTML) $(code_coverage_quiet) $(addprefix --prefix ,$(CODE_COVERAGE_DIRECTORY)) --output-directory "$(CODE_COVERAGE_OUTPUT_DIRECTORY)" --title "$(PACKAGE_NAME)-$(PACKAGE_VERSION) Code Coverage" --legend --show-details "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_GENHTML_OPTIONS) + @echo "file://$(abs_builddir)/$(CODE_COVERAGE_OUTPUT_DIRECTORY)/index.html" +'] + [CODE_COVERAGE_RULES_CLEAN=' +clean: code-coverage-clean +distclean: code-coverage-clean +code-coverage-clean: + -$(LCOV) --directory $(top_builddir) -z + -rm -rf $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_FILE).tmp $(CODE_COVERAGE_OUTPUT_DIRECTORY) + -find . \( -name "*.gcda" -o -name "*.gcno" -o -name "*.gcov" \) -delete +'] +]) + +AC_DEFUN([_AX_CODE_COVERAGE_DISABLED],[ + [CODE_COVERAGE_RULES_CHECK=' + @echo "Need to reconfigure with --enable-code-coverage" + '] + CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK" + CODE_COVERAGE_RULES_CLEAN='' +]) + +AC_DEFUN([AX_CODE_COVERAGE],[ + dnl Check for --enable-code-coverage + + # allow to override gcov location + AC_ARG_WITH([gcov], + [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])], + [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov], + [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov]) + + AC_MSG_CHECKING([whether to build with code coverage support]) + AC_ARG_ENABLE([code-coverage], + AS_HELP_STRING([--enable-code-coverage], + [Whether to enable code coverage support]),, + enable_code_coverage=no) + + AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test "x$enable_code_coverage" = xyes]) + AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage]) + AC_MSG_RESULT($enable_code_coverage) + + AS_IF([ test "x$enable_code_coverage" = xyes ], [ + _AX_CODE_COVERAGE_ENABLED + ], [ + _AX_CODE_COVERAGE_DISABLED + ]) + +[CODE_COVERAGE_RULES=' +# Code coverage +# +# Optional: +# - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. +# Multiple directories may be specified, separated by whitespace. +# (Default: $(top_builddir)) +# - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated +# by lcov for code coverage. (Default: +# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info) +# - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage +# reports to be created. (Default: +# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage) +# - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, +# set to 0 to disable it and leave empty to stay with the default. +# (Default: empty) +# - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov +# instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) +# - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov +# instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) +# - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov +# - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the +# collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) +# - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov +# instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) +# - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering +# lcov instance. (Default: empty) +# - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov +# instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) +# - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the +# genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) +# - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml +# instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) +# - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore +# +# The generated report will be titled using the $(PACKAGE_NAME) and +# $(PACKAGE_VERSION). In order to add the current git hash to the title, +# use the git-version-gen script, available online. + +# Optional variables +CODE_COVERAGE_DIRECTORY ?= $(top_builddir) +CODE_COVERAGE_OUTPUT_FILE ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info +CODE_COVERAGE_OUTPUT_DIRECTORY ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage +CODE_COVERAGE_BRANCH_COVERAGE ?= +CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ +--rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) +CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) +CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" +CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) +CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) +CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= +CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) +CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ +$(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ +--rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) +CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) +CODE_COVERAGE_IGNORE_PATTERN ?= + +GITIGNOREFILES ?= +GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) + +code_coverage_v_lcov_cap = $(code_coverage_v_lcov_cap_$(V)) +code_coverage_v_lcov_cap_ = $(code_coverage_v_lcov_cap_$(AM_DEFAULT_VERBOSITY)) +code_coverage_v_lcov_cap_0 = @echo " LCOV --capture"\ + $(CODE_COVERAGE_OUTPUT_FILE); +code_coverage_v_lcov_ign = $(code_coverage_v_lcov_ign_$(V)) +code_coverage_v_lcov_ign_ = $(code_coverage_v_lcov_ign_$(AM_DEFAULT_VERBOSITY)) +code_coverage_v_lcov_ign_0 = @echo " LCOV --remove /tmp/*"\ + $(CODE_COVERAGE_IGNORE_PATTERN); +code_coverage_v_genhtml = $(code_coverage_v_genhtml_$(V)) +code_coverage_v_genhtml_ = $(code_coverage_v_genhtml_$(AM_DEFAULT_VERBOSITY)) +code_coverage_v_genhtml_0 = @echo " GEN " $(CODE_COVERAGE_OUTPUT_DIRECTORY); +code_coverage_quiet = $(code_coverage_quiet_$(V)) +code_coverage_quiet_ = $(code_coverage_quiet_$(AM_DEFAULT_VERBOSITY)) +code_coverage_quiet_0 = --quiet + +# sanitizes the test-name: replaces with underscores: dashes and dots +code_coverage_sanitize = $(subst -,_,$(subst .,_,$(1))) + +# Use recursive makes in order to ignore errors during check +check-code-coverage:'"$CODE_COVERAGE_RULES_CHECK"' + +# Capture code coverage data +code-coverage-capture: code-coverage-capture-hook'"$CODE_COVERAGE_RULES_CAPTURE"' + +# Hook rule executed before code-coverage-capture, overridable by the user +code-coverage-capture-hook: + +'"$CODE_COVERAGE_RULES_CLEAN"' + +A''M_DISTCHECK_CONFIGURE_FLAGS ?= +A''M_DISTCHECK_CONFIGURE_FLAGS += --disable-code-coverage + +.PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean +'] + + AC_SUBST([CODE_COVERAGE_RULES]) + m4_ifdef([_AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE([CODE_COVERAGE_RULES])]) +]) diff --git a/m4/ax_lapack.m4 b/m4/ax_lapack.m4 new file mode 100644 --- /dev/null +++ b/m4/ax_lapack.m4 @@ -0,0 +1,134 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_lapack.html +# =========================================================================== +# +# SYNOPSIS +# +# AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) +# +# DESCRIPTION +# +# This macro looks for a library that implements the LAPACK linear-algebra +# interface (see http://www.netlib.org/lapack/). On success, it sets the +# LAPACK_LIBS output variable to hold the requisite library linkages. +# +# To link with LAPACK, you should link with: +# +# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS +# +# in that order. BLAS_LIBS is the output variable of the AX_BLAS macro, +# called automatically. FLIBS is the output variable of the +# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is +# sometimes necessary in order to link with F77 libraries. Users will also +# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same +# reason. +# +# The user may also use --with-lapack= in order to use some specific +# LAPACK library . In order to link successfully, however, be aware +# that you will probably need to use the same Fortran compiler (which can +# be set via the F77 env. var.) as was used to compile the LAPACK and BLAS +# libraries. +# +# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library +# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it +# is not found. If ACTION-IF-FOUND is not specified, the default action +# will define HAVE_LAPACK. +# +# LICENSE +# +# Copyright (c) 2009 Steven G. Johnson +# Copyright (c) 2019 Geoffrey M. Oxberry +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the +# Free Software Foundation, either version 3 of the License, or (at your +# option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General +# Public License for more details. +# +# You should have received a copy of the GNU General Public License along +# with this program. If not, see . +# +# As a special exception, the respective Autoconf Macro's copyright owner +# gives unlimited permission to copy, distribute and modify the configure +# scripts that are the output of Autoconf when processing the Macro. You +# need not follow the terms of the GNU General Public License when using +# or distributing such scripts, even though portions of the text of the +# Macro appear in them. The GNU General Public License (GPL) does govern +# all other use of the material that constitutes the Autoconf Macro. +# +# This special exception to the GPL applies to versions of the Autoconf +# Macro released by the Autoconf Archive. When you make and distribute a +# modified version of the Autoconf Macro, you may extend this special +# exception to the GPL to apply to your modified version as well. + +#serial 10 + +AU_ALIAS([ACX_LAPACK], [AX_LAPACK]) +AC_DEFUN([AX_LAPACK], [ +AC_REQUIRE([AX_BLAS]) +ax_lapack_ok=no + +AC_ARG_WITH(lapack, + [AS_HELP_STRING([--with-lapack=], [use LAPACK library ])]) +case $with_lapack in + yes | "") ;; + no) ax_lapack_ok=disable ;; + -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o) + LAPACK_LIBS="$with_lapack" + ;; + *) LAPACK_LIBS="-l$with_lapack" ;; +esac + +# Get fortran linker name of LAPACK function to check for. +AC_F77_FUNC(cheev) + +# We cannot use LAPACK if BLAS is not found +if test "x$ax_blas_ok" != xyes; then + ax_lapack_ok=noblas + LAPACK_LIBS="" +fi + +# First, check LAPACK_LIBS environment variable +if test "x$LAPACK_LIBS" != x; then + save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS" + AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$cheev])], [ax_lapack_ok=yes], [LAPACK_LIBS=""]) + AC_MSG_RESULT($ax_lapack_ok) + LIBS="$save_LIBS" + if test $ax_lapack_ok = no; then + LAPACK_LIBS="" + fi +fi + +# LAPACK linked to by default? (is sometimes included in BLAS lib) +if test $ax_lapack_ok = no; then + save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS" + AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes]) + LIBS="$save_LIBS" +fi + +# Generic LAPACK library? +for lapack in lapack lapack_rs6k; do + if test $ax_lapack_ok = no; then + save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" + AC_CHECK_LIB($lapack, $cheev, + [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS]) + LIBS="$save_LIBS" + fi +done + +AC_SUBST(LAPACK_LIBS) + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x"$ax_lapack_ok" = xyes; then + ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1]) + : +else + ax_lapack_ok=no + $2 +fi +])dnl AX_LAPACK diff --git a/spqr.pc.in b/spqr.pc.in new file mode 100644 --- /dev/null +++ b/spqr.pc.in @@ -0,0 +1,13 @@ +prefix=@prefix@ +exec_prefix=@exec_prefix@ +libdir=@libdir@ +includedir=@includedir@ + +Name: @PACKAGE_NAME@ +Description: Multifrontal sparse QR factorization +Version: @PACKAGE_VERSION@ +URL: @PACKAGE_URL@ +Requires.private: cholmod suitesparseconfig +Libs: -L${libdir} -lspqr +Libs.private: @TBB_LIBS@ @LAPACK_LIBS@ @BLAS_LIBS@ -lm +Cflags: -I${includedir}/spqr