The following packages will be installed: RAxML Fetching RAxML.SlackBuild... 0%100%100%100%100%100%Done Fetching RAxML.info... 0%100%100%100%100%100%Done Fetching README... 0%100%100%100%100%100%Done Fetching References... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done standard-RAxML-8.2.12/ standard-RAxML-8.2.12/.gitignore standard-RAxML-8.2.12/Makefile.AVX.HYBRID.gcc standard-RAxML-8.2.12/Makefile.AVX.MPI.gcc standard-RAxML-8.2.12/Makefile.AVX.PTHREADS.gcc standard-RAxML-8.2.12/Makefile.AVX.PTHREADS.mac standard-RAxML-8.2.12/Makefile.AVX.gcc standard-RAxML-8.2.12/Makefile.AVX.mac standard-RAxML-8.2.12/Makefile.AVX2.HYBRID.gcc standard-RAxML-8.2.12/Makefile.AVX2.MPI.gcc standard-RAxML-8.2.12/Makefile.AVX2.PTHREADS.gcc standard-RAxML-8.2.12/Makefile.AVX2.PTHREADS.mac standard-RAxML-8.2.12/Makefile.AVX2.gcc standard-RAxML-8.2.12/Makefile.AVX2.mac standard-RAxML-8.2.12/Makefile.HYBRID.gcc standard-RAxML-8.2.12/Makefile.MPI.gcc standard-RAxML-8.2.12/Makefile.PTHREADS.gcc standard-RAxML-8.2.12/Makefile.PTHREADS.mac standard-RAxML-8.2.12/Makefile.QuartetMPI.gcc standard-RAxML-8.2.12/Makefile.SSE3.HYBRID.gcc standard-RAxML-8.2.12/Makefile.SSE3.MPI.gcc standard-RAxML-8.2.12/Makefile.SSE3.PTHREADS.gcc standard-RAxML-8.2.12/Makefile.SSE3.PTHREADS.mac standard-RAxML-8.2.12/Makefile.SSE3.QuartetMPI.gcc standard-RAxML-8.2.12/Makefile.SSE3.gcc standard-RAxML-8.2.12/Makefile.SSE3.mac standard-RAxML-8.2.12/Makefile.gcc standard-RAxML-8.2.12/README standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/ standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/README standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC-AVX.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC-AVX2.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC-PTHREADS-AVX.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC-PTHREADS-AVX2.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC-PTHREADS-SSE3.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC-PTHREADS.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC-SSE3.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.10/raxmlHPC.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/ standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/README standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/pthreadGC2.dll standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/raxmlHPC-AVX.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/raxmlHPC-PTHREADS-AVX.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/raxmlHPC-PTHREADS-SSE3.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/raxmlHPC-PTHREADS.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/raxmlHPC-SSE3.exe standard-RAxML-8.2.12/WindowsExecutables_v8.2.4/raxmlHPC.exe standard-RAxML-8.2.12/ancestralStates.c standard-RAxML-8.2.12/avxLikelihood.c standard-RAxML-8.2.12/axml.c standard-RAxML-8.2.12/axml.h standard-RAxML-8.2.12/bipartitionList.c standard-RAxML-8.2.12/classify.c standard-RAxML-8.2.12/eigen.c standard-RAxML-8.2.12/evaluateGenericSpecial.c standard-RAxML-8.2.12/evaluatePartialGenericSpecial.c standard-RAxML-8.2.12/fastDNAparsimony.c standard-RAxML-8.2.12/fastSearch.c standard-RAxML-8.2.12/globalVariables.h standard-RAxML-8.2.12/gpl-3.0.txt standard-RAxML-8.2.12/leaveDropping.c standard-RAxML-8.2.12/legacyCode.c standard-RAxML-8.2.12/makenewzGenericSpecial.c standard-RAxML-8.2.12/manual/ standard-RAxML-8.2.12/manual/NewManual.odt standard-RAxML-8.2.12/manual/NewManual.pdf standard-RAxML-8.2.12/mem_alloc.c standard-RAxML-8.2.12/models.c standard-RAxML-8.2.12/multiple.c standard-RAxML-8.2.12/newviewGenericSpecial.c standard-RAxML-8.2.12/optimizeModel.c standard-RAxML-8.2.12/parsePartitions.c standard-RAxML-8.2.12/rapidBootstrap.c standard-RAxML-8.2.12/rmq.h standard-RAxML-8.2.12/rmqs.c standard-RAxML-8.2.12/rmqs.h standard-RAxML-8.2.12/rogueEPA.c standard-RAxML-8.2.12/searchAlgo.c standard-RAxML-8.2.12/topologies.c standard-RAxML-8.2.12/treeIO.c standard-RAxML-8.2.12/usefulScripts/ standard-RAxML-8.2.12/usefulScripts/ProteinModelSelection.pl standard-RAxML-8.2.12/usefulScripts/applyRAxML2AllFilesInDirectory.pl standard-RAxML-8.2.12/usefulScripts/bsBranchLengths.pl standard-RAxML-8.2.12/usefulScripts/convertFasta2Phylip.sh rm -f *.o raxml gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o axml.o axml.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o optimizeModel.o optimizeModel.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o multiple.o multiple.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o searchAlgo.o searchAlgo.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o topologies.o topologies.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o parsePartitions.o parsePartitions.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o treeIO.o treeIO.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o models.o models.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o bipartitionList.o bipartitionList.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o rapidBootstrap.o rapidBootstrap.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o newviewGenericSpecial.o newviewGenericSpecial.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o classify.o classify.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o fastDNAparsimony.o fastDNAparsimony.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o fastSearch.o fastSearch.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o leaveDropping.o leaveDropping.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o rmqs.o rmqs.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o rogueEPA.o rogueEPA.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o ancestralStates.o ancestralStates.c gcc -O2 -fPIC -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o mem_alloc.o mem_alloc.c gcc -c -o eigen.o eigen.c gcc -o raxml axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o mem_alloc.o eigen.o -lm rm -f *.o raxml-MPI mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o axml.o axml.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o optimizeModel.o optimizeModel.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o multiple.o multiple.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o searchAlgo.o searchAlgo.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o topologies.o topologies.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o parsePartitions.o parsePartitions.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o treeIO.o treeIO.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o models.o models.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o bipartitionList.o bipartitionList.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o rapidBootstrap.o rapidBootstrap.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o classify.o classify.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o fastDNAparsimony.o fastDNAparsimony.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o fastSearch.o fastSearch.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o leaveDropping.o leaveDropping.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o rmqs.o rmqs.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o rogueEPA.o rogueEPA.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o ancestralStates.o ancestralStates.c mpicc -O2 -fPIC -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -c -o mem_alloc.o mem_alloc.c mpicc -c -o eigen.o eigen.c mpicc -o raxml-MPI axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o mem_alloc.o eigen.o -lm Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/RAxML/RAxML-8.2.12-x86_64-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/raxml usr/bin/raxml-MPI usr/doc/ usr/doc/RAxML-8.2.12/ usr/doc/RAxML-8.2.12/RAxML.SlackBuild usr/doc/RAxML-8.2.12/README usr/doc/RAxML-8.2.12/References usr/doc/RAxML-8.2.12/manual/ usr/doc/RAxML-8.2.12/manual/NewManual.odt usr/doc/RAxML-8.2.12/manual/NewManual.pdf usr/share/ usr/share/RAxML/ usr/share/RAxML/usefulScripts/ usr/share/RAxML/usefulScripts/ProteinModelSelection.pl usr/share/RAxML/usefulScripts/applyRAxML2AllFilesInDirectory.pl usr/share/RAxML/usefulScripts/bsBranchLengths.pl usr/share/RAxML/usefulScripts/convertFasta2Phylip.sh Slackware package /usr/src/slapt-src/academic/RAxML/RAxML-8.2.12-x86_64-1salix15.0.txz created. Installing package RAxML-8.2.12-x86_64-1salix15.0... | RAxML (Randomized Axelerated Maximum Likelihood) | | RAxML is a program for sequential and parallel Maximum Likelihood | (ML) based inference of large phylogenetic trees. It can also be | used for postanalyses of sets of phylogenetic trees, analyses of | alignments and, evolutionary placement of short reads. | | https://cme.h-its.org/exelixis/web/software/raxml/index.html | https://github.com/stamatak/standard-RAxML | | | |