./
install/
install/doinst.sh
install/slack-desc
opt/
opt/SeqMonk/
opt/SeqMonk/Help/
opt/SeqMonk/Help/1 Introduction/
opt/SeqMonk/Help/1 Introduction/1.1 What is SeqMonk.html
opt/SeqMonk/Help/1 Introduction/1.2 Terminology.html
opt/SeqMonk/Help/2 Opening a Project/
opt/SeqMonk/Help/2 Opening a Project/2.1 Opening an Existing Project.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2 Starting a New Project.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.1 Selecting a Genome.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2 Importing Data.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.1 BED Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.10 Importing Probes as Data.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.3 Bowtie Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.4 Eland Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.5 GFF Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.6 Maq Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.7 SAM or BAM Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.8 Generic Text Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/2.2.2.9 Reimporting Existing Data.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/bowtie_options.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/edit_data_sets.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/eland_options.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/import_warnings.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/maq_options.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/reimport_options.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/sam_options.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.2 Importing Data/text_file_import.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.3 Grouping Samples.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.4 Importing Extra Annotation/
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.4 Importing Extra Annotation/2.2.4 Importing Extra Annotation.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.4 Importing Extra Annotation/2.2.4.1 Importing Annotation from GFF or GTF Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.4 Importing Extra Annotation/2.2.4.2 Importing Annotation from a Probe List.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.4 Importing Extra Annotation/2.2.4.3 Importing Annotation from Generic Text Files.html
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.4 Importing Extra Annotation/annotation_sets_folder.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/2.2.4 Importing Extra Annotation/generic_text_import_annotation.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/auto_split_options.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/data_groups.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/genome_selector.png
opt/SeqMonk/Help/2 Opening a Project/2.2 Starting a New Project/remote_genome_selector.png
opt/SeqMonk/Help/3 Visualisation/
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/3.1 The Main Display.html
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/3.1.1 The Data View.html
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/3.1.2 The Genome View.html
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/3.1.3 The Chromosome View.html
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/3.1.4 The Toolbar.html
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/3.1.5 The Status Bar.html
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/chromosome_view.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/data_track_display_options.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/data_view.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/data_view_datastore_popup.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/data_zoom_level.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/feature_annotation.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/genome_view.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/main_display.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/probe_list_view.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/set_annotation_tracks.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/set_data_tracks.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/status_bar.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/toolbar_change_density.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/toolbar_change_packing.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/toolbar_change_tracks.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/toolbar_data_zoom.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/toolbar_display_type.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/toolbar_origin_options.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/toolbar_search.png
opt/SeqMonk/Help/3 Visualisation/3.1 The Main Display/whole_toolbar.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2 Figures and Graphs.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.1 The BoxWhisker Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.10 The Correlation Matrix.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.11 The Cumulative Distribution Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.12 The HiC Heatmap Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.13 The MA Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.14 The HiC Length Histogram.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.15 The Hierarchical Cluster Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.16 The HiC Cis-Trans Scatterplot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.17 The Domainogram Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.18 The Quantitation Trend Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.19 The Probe List Overlap Matrix.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.2 The DataStore Tree.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.20 The Star Wars Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.22 The RNA-Seq QC Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.23 The Small RNA QC Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.24 The Variation Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.25 The Bean Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.25 The PCA Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.26 The TSNE Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.27 The Strand Bias Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.27 The Volcano Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.3 The Probe Value Histogram.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.4 The Probe Length Histogram.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.5 The Reading Length Histogram.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.6 The Probe Trend Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.7 The Aligned Probes Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.8 The Scatter Plot.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/3.2.9 The Line Graph.html
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/aligned_probes_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/aligned_probes_preferences.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/bean_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/boxwhisker_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/correlation_matrix.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/datastore_tree.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/distribution_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/domainogram.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/domainogram_options.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/hic_cis-trans_scatterplot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/hic_heatmap.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/hic_heatmap_options.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/hic_length_histogram.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/hierarchical_clusters.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/line_graph.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/ma_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/pca_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/pca_variances.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/probe_list_overlap_matrix.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/probe_trend_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/probe_trend_preferences.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/probe_value_histogram.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/quantitation_trend_options.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/quantitation_trend_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/rna_seq_qc_options.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/rna_seq_qc_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/scatter_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/scatter_plot_sublists.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/small_rna_qc_options.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/small_rna_qc_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/starwars_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/strand_bias_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/tsne_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/variation_plot.png
opt/SeqMonk/Help/3 Visualisation/3.2 Figures and Graphs/volcano_plot.png
opt/SeqMonk/Help/3 Visualisation/3.3 Movement Controls.html
opt/SeqMonk/Help/3 Visualisation/3.4 Searching.html
opt/SeqMonk/Help/3 Visualisation/after_zooming.png
opt/SeqMonk/Help/3 Visualisation/find_features.png
opt/SeqMonk/Help/3 Visualisation/goto_position.png
opt/SeqMonk/Help/3 Visualisation/goto_window.png
opt/SeqMonk/Help/3 Visualisation/whilst_zooming.png
opt/SeqMonk/Help/4 Quantitation/
opt/SeqMonk/Help/4 Quantitation/4 Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.1 Running Window Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.10 Merge Consecutive Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.11 MACS Peak Caller Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.12 Random Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.13 Shuffle Existing List Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.14 Even Coverage Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.2 Contig Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.3 Feature Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.4 Feature Percentile Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.5 Create Probes from Existing List Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.6 Interstitial Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.7 Deduplication Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.8 Read Position Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/4.1.9 Current Region Probe Generator.html
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/contig_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/contig_probe_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/deduplication_probe_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/even_coverage_probe_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/feature_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/feature_percentile_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/interstitial_probe_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/macs_options.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/merge_consecutive_probe_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/read_position_probe_generator.png
opt/SeqMonk/Help/4 Quantitation/4.1 Probe Generators/running_window_generator.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.1 Read Count Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.10 Per Probe Normalisation Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.11 Exact Overlap Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.12 Z-Score Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.13 Match Distribution Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.14 Fixed Value Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.15 HiC Read Count Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.16 HiC Trans Cis Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.17 HiC Prev Next Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.18 HiC PCA Domain Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.19 4C Enrichment Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.2 Base Pair Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.20 Distance to Feature Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.21 Smoothing Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.22 Probe Length Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.23 Smoothing Subtraction Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.24 Log Transform Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.25 Subset Normalisation Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.26 Enrichment Normalisation Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.27 Linear Regression Normalisation Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.28 Duplication Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.3 Enrichment Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.4 Difference Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.5 Coverage Depth Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.6 Percentage Coverage Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.7 Relative Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.8 Manual Correction Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.9 Percentile Normalisation Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/4.2.9 Rank Quantitation.html
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/Coverage Depth Quantitationpic.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/base_pair_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/coverage_depth_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/difference_quantitationpic.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/distance_to_feature_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/exact_overlap_count_quantitiation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/hic_pca_domain_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/hic_prev_next_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/hic_read_count_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/hic_trans_cis_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/manual_correction_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/percent_coverage_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/percentile_normalisation_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/read_count_quanititation.png
opt/SeqMonk/Help/4 Quantitation/4.2 Quantitation Methods/z_score_quantitation.png
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.1 RNA-Seq quantitation pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.2 Wiggle pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.3 Bisulphite feature methylation pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.4 Splicing Efficiency pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.5 Antisense Transcription pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.6 Genetrap quantitation pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.7 Active transcription quantitation pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/4.3.8 Transcription termination quantitation pipeline.html
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/bsseq_options.png
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/genetrap_options.png
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/rpkm_options.png
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/splicing_efficiency_options.png
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/splicing_efficiency_quantitiation.PNG
opt/SeqMonk/Help/4 Quantitation/4.3 Pipelines/termination_options.png
opt/SeqMonk/Help/4 Quantitation/define_probes.png
opt/SeqMonk/Help/4 Quantitation/quantitation_options.png
opt/SeqMonk/Help/5 Filtering/
opt/SeqMonk/Help/5 Filtering/5 Filtering.html
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/5.1.1 Individual Probe Value Filter.html
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/5.1.2 Windowed Value Filter.html
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/5.1.3 Individual Probe Value Difference Filter.html
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/5.1.4 Windowed Value Difference Filter.html
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/5.1.5 Value Distribution Filter.html
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/individual_probe_value_difference_options.png
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/individual_probe_value_options.png
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/value_distribution_filter_options.png
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/windowed_probe_value_difference_options.png
opt/SeqMonk/Help/5 Filtering/5.1 Value Filters/windowed_value_options.png
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.1 BoxWhisker Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.2 Windowed Replicate Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.3 Replicate Set Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.4 Intensity Difference Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.6 Monte Carlo Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.7 Chi Square Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.8 Binomial Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/5.2.9 Proportion of Library Filter.html
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/boxwhisker_filter_options.png
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/replicate_filter_options.png
opt/SeqMonk/Help/5 Filtering/5.2 Statistical Filters/replicate_set_filter_options.png
opt/SeqMonk/Help/5 Filtering/5.3 R Statistical Filters/
opt/SeqMonk/Help/5 Filtering/5.3 R Statistical Filters/5.3.1 DESeq2 Filter.html
opt/SeqMonk/Help/5 Filtering/5.3 R Statistical Filters/5.3.2 EdgeR Filter.html
opt/SeqMonk/Help/5 Filtering/5.3 R Statistical Filters/5.3.4 EdgeR for-rev Filter.html
opt/SeqMonk/Help/5 Filtering/5.3 R Statistical Filters/5.3.4 Logistic Regression Filter.html
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opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/HeatmapMatrix$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/HeatmapMatrix$ProbeWithIndex.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/HeatmapMatrix.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/HeatmapMatrixListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/HiCInteractionStrengthCalculator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/InteractionClusterMatrix.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Interaction/InteractionProbePair.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/PairedDataSet$ChromosomeDataStore.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/PairedDataSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Probes/
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Probes/Probe.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Probes/ProbeList.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Probes/ProbeSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Probes/ProbeSetChangeListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Probes/ProbeStrandType.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/ProgressListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/ReplicateSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Sequence/
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Sequence/HiCHitCollection.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Sequence/QuantitationStrandType.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Sequence/ReadStrandType.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Sequence/ReadsWithCounts.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Sequence/SequenceRead.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataTypes/Sequence/SequenceReadWithChromosome.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/BedDataWriter$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/BedDataWriter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/BedGraphDataWriter$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/BedGraphDataWriter$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/BedGraphDataWriter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/SeqMonkDataWriter$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/DataWriters/SeqMonkDataWriter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AboutDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AboutDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AnnotationSetEditor/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AnnotationSetEditor/AnnotationSetEditor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AnnotationSetPropertiesDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AnnotationSetPropertiesDialog$AnnotationSetTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AnnotationSetPropertiesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AnnotationTrackSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AutoSplitDataDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AutoSplitDataDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AutoSplitDataDialog$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AutoSplitDataDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AxisScaleEditor$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AxisScaleEditor$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AxisScaleEditor$axisPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/AxisScaleEditor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/Cancellable.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/CrashReporter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/CrashReporter/CrashReporter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/CrashReporter/CrashReporterDialog$ReportSender.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/CrashReporter/CrashReporterDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataParser/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataParser/DataParserOptionsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/CollectDataSetNamesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/DataSetEditor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/MultiDataSetRenameDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/MultiDataSetRenameDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/MultiDataSetRenameDialog$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/MultiDataSetRenameDialog$renameTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataSetEditor/MultiDataSetRenameDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataStorePropertiesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataTrackSelector/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataTrackSelector/DataStoreListModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataTrackSelector/DataTrackSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/DataZoomSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/EditPreferencesDialog$FeatureSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/EditPreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/Filters/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/Filters/FilterOptionsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/FindFeatureDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/FindFeaturesByNameDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeDownloadSelector$ButtonListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeDownloadSelector$TreeListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeDownloadSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeSelector$AssemblyNode.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeSelector$AssemblySetNode.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeSelector$ButtonListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeSelector$TreeListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeSelector$VersionedAssembly.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GenomeSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GotoDialog/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GotoDialog/GotoDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GotoDialog/GotoWindowDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GotoDialog/RecentLocation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GroupEditor$NameGatherer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/GroupEditor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/LicenseDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ListOverlapsDialog$HitListModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ListOverlapsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/OrderedListSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/OrderedReplicateSetSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProbeListCommentEditDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProbeListSelectorDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProbeListSelectorDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProbeListSelectorDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProbeListViewer$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProbeListViewer$ProbeTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProbeListViewer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProgressDialog/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProgressDialog/CountedException.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProgressDialog/ProgressDialog$ProgressBar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProgressDialog/ProgressDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProgressDialog/WarningDisplayDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProgressRecordDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ProgressRecordDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/Renderers/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/Renderers/QuantitationTypeRenderer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/Renderers/TypeColourRenderer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ReplicateSetEditor$NameGatherer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ReplicateSetEditor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ReplicateSetSelector$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/ReplicateSetSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/SeqMonkPreview/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/SeqMonkPreview/SeqMonkPreview.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/SeqMonkPreview/SeqMonkPreviewPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/SimilarProbeListsDialog$HitListModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/SimilarProbeListsDialog$ProbeListHit.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Dialogs/SimilarProbeListsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryDialog$CountSorter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryPanel$Smoother.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryPreferences.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/AlignedSummaryPreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/CorrelationPair.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/AlignedProbePlot/CorrelationSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BeanPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BeanPlot/BeanPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BeanPlot/BeanPlotScaleBar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BeanPlot/MultiBeanPlotDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BeanPlot/MultiBeanPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BeanPlot/MultiBeanPlotPanel$NoWidthLabel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BeanPlot/MultiBeanPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BoxWhisker/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BoxWhisker/BoxWhiskerPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BoxWhisker/MultiBoxWhiskerDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BoxWhisker/MultiBoxWhiskerDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BoxWhisker/MultiBoxWhiskerDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BoxWhisker/MultiBoxWhiskerPanel$NoWidthLabel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/BoxWhisker/MultiBoxWhiskerPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeDataTrack$DrawnProbe.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeDataTrack$DrawnRead.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeDataTrack.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeFeatureTrack$DrawnFeature.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeFeatureTrack$FeatureListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeFeatureTrack.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomePositionScrollBar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeScaleTrack.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeViewer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/ChromosomeViewerLayout.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ChromosomeViewer/MinSizeDataTrack.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CisTransScatterplot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CisTransScatterplot/CisTransScatterPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CisTransScatterplot/CisTransScatterPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CisTransScatterplot/CisTransScatterPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CodonBiasPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CodonBiasPlot/CodonBiasDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CodonBiasPlot/CodonBiasPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CodonBiasPlot/SingleFeatureSelector$FeatureTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CodonBiasPlot/SingleFeatureSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix$4.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix$CorrelationNamePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix$CorrelationPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix$DistanceTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CorrelationMatrix/CorrelationMatrix.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CumulativeDistribution/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CumulativeDistribution/CumulativeDistributionDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/CumulativeDistribution/CumulativeDistributionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreClusterPanel$xyPosition.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreClusterPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreCorrelationDataSource.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreTreeDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreTreeDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreTreeDialog$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreTreeDialog$4.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreTreeDialog$5.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreTreeDialog$6.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataStoreTree/DataStoreTreeDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataCollectionTreeModel$folderNode.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataCollectionTreeModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataTreeRenderer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataViewer$AnnotationPopupMenu.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataViewer$DataPopupMenu.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataViewer$GroupPopupMenu.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataViewer$ProbePopupMenu.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataViewer$ReplicatePopupMenu.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataViewer$UnfocusableTree.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/DataViewer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/ProbeSetTreeModel$folderNode.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DataViewer/ProbeSetTreeModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DesignEditor/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DesignEditor/InvalidFactorException.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DesignEditor/StatisticalDesign.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DesignEditor/StatisticalDesignEditorDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Domainogram/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Domainogram/DomainogramChromosomePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Domainogram/DomainogramDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Domainogram/DomainogramDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Domainogram/DomainogramDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Domainogram/DomainogramPreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DuplicationPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DuplicationPlot/DuplicationPlotDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DuplicationPlot/DuplicationPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DuplicationPlot/DuplicationPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DuplicationPlot/DuplicationPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DuplicationPlot/RestrictedDataStoreSelector$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/DuplicationPlot/RestrictedDataStoreSelector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeatureListViewer/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeatureListViewer/FeatureListViewer$FeatureTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeatureListViewer/FeatureListViewer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeaturePositionSelector/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeaturePositionSelector/FeaturePercentileSelectorPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeaturePositionSelector/FeaturePercentileSelectorPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeaturePositionSelector/FeaturePositionSelectorPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeaturePositionSelector/FeaturePositionSelectorPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeatureViewer/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeatureViewer/FeatureAnnotationTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/FeatureViewer/FeatureViewer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GenomeViewer/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GenomeViewer/ChromosomeDisplay$PanelListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GenomeViewer/ChromosomeDisplay.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GenomeViewer/ChromosomeScale.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GenomeViewer/GenomeViewer$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GenomeViewer/GenomeViewer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/GiraphPlot.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/GiraphPlotCluster.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/GiraphPlotClusterPair.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/GiraphPlotPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/GiraphPlotPanel$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/GiraphPlotPanel$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GiraphPlot/GiraphPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GradientScaleBar/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GradientScaleBar/GradientPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GradientScaleBar/GradientScaleAxis.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/GradientScaleBar/GradientScaleBar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HTMLDisplay/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HTMLDisplay/HTMLDisplayDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/HelpDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/HelpIndexRoot$FileSorter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/HelpIndexRoot.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/HelpPage.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/HelpPageDisplay$HelpEditor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/HelpPageDisplay.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Help/HelpSearchPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapFilterOptions.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapGenomePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapGenomePanelCollection.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapGenomeWindow$HeatmapOptionsDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapGenomeWindow$HeatmapOptionsDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapGenomeWindow$HeatmapOptionsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapGenomeWindow.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapPositionListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapProbeListPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapProbeListPanelCollection.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapProbeListWindow$HeatmapOptionsDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapProbeListWindow$HeatmapOptionsDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapProbeListWindow$HeatmapOptionsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HeatmapProbeListWindow.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HiCHeatmap/HiCGradientPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HierarchicalClusterPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HierarchicalClusterPlot/HierarchicalClusterCorrelationDataSource.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HierarchicalClusterPlot/HierarchicalClusterDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HierarchicalClusterPlot/HierarchicalClusterDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HierarchicalClusterPlot/HierarchicalClusterDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HierarchicalClusterPlot/HierarchicalClusterDistanceDataSource.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HierarchicalClusterPlot/HierarchicalClusterPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/HiCLengthHistogramPlot.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/HistogramPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/HistogramPanel$HistogramCategory.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/HistogramPanel$MainHistogramPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/HistogramPanel$StatusPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/HistogramPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/ProbeLengthHistogramPlot.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/ProbeValueHistogramPlot.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/HistogramPlot/ReadLengthHistogramPlot.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/LineGraph/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/LineGraph/LineGraphDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/LineGraph/LineGraphPanel$ProbeSorter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/LineGraph/LineGraphPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/MAPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/MAPlot/MAPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/MAPlot/MAPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/MAPlot/MAPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenome.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenomeBuilderDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenomeBuilderPanel$SimpleFastaReader$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenomeBuilderPanel$SimpleFastaReader$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenomeBuilderPanel$SimpleFastaReader.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenomeBuilderPanel$SimpleGFFReader.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenomeBuilderPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualGenomeChromosome.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ManualGenomeBuilder/ManualPseudoGenome.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/MemoryMonitor/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/MemoryMonitor/MemoryMonitor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCADataCalculator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCAHistogramPanel$HistogramCategory.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCAHistogramPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCAScatterPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCAScatterPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCAScatterPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCASource.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/PCAVarianceDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/VarianceLineGraphPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/PCAPlot/pca_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeListAnnotationSelector/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeListAnnotationSelector/ProbeListAnnotation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeListAnnotationSelector/ProbeListAnnotationSelectorDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeListReport/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeListReport/ProbeListReport.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeListReport/ProbeListReportCreator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeSelectionListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeTrendPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeTrendPlot/TrendOverProbeDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeTrendPlot/TrendOverProbeDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeTrendPlot/TrendOverProbePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeTrendPlot/TrendOverProbePreferences.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ProbeTrendPlot/TrendOverProbePreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QQDistributionPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QQDistributionPlot/QQDistributionDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QQDistributionPlot/QQDistributionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/AxisScalePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/HeatmapPanel/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/HeatmapPanel/QuantitationHeatmapPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/HeatmapPanel/QuantitationHeatmapPanelGroup$sameWidthJLabel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/HeatmapPanel/QuantitationHeatmapPanelGroup.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/NamePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendData.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendHeatmapDialog$1$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendHeatmapDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendHeatmapDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendHeatmapDialog$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendHeatmapDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendHeatmapPreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendPlotDialog$1$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendPlotDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendPlotPreferencesDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendPlotPreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/QuantitationTrendPlot/QuantitationTrendPlotPreferencesPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/DataStoreNamePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/PercentileStripChart.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCCalcualtor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCPreferencesDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCPreferencesDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCPreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCResult.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCResultsDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCResultsDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCResultsDialog$3$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCResultsDialog$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCResultsDialog$4.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/RNAQCResultsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/RNASeqQCPlot/SampleSelectionListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Report/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Report/InteractionReport/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Report/InteractionReport/InteractionReportOptions.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Report/InteractionReport/InteractionReportTableDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Report/InteractionReport/InteractionReportTableDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Report/ReportOptions.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Report/ReportTableDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ScatterPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ScatterPlot/ScatterPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ScatterPlot/ScatterPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/ScatterPlot/ScatterPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallDoubleCellRenderer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/FeatureNamePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAQCCalcualtor.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAQCPreferencesDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAQCResult.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAResultPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAResultsDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAResultsDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAResultsDialog$3$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAResultsDialog$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/SmallRNAQCPlot/SmallRNAResultsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StarWars/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StarWars/MultiStarWarsDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StarWars/MultiStarWarsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StarWars/MultiStarWarsPanel$NoWidthLabel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StarWars/MultiStarWarsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StarWars/StarWarsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StatusPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StrandBias/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StrandBias/StrandBiasPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StrandBias/StrandBiasPlotPanel$DirectionPoint.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StrandBias/StrandBiasPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/StrandBias/StrandBiasPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/TsneDataStorePlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/TsneDataStorePlot/TsneDataStoreResult.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/TsneDataStorePlot/TsneOptionsDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/TsneDataStorePlot/tsne_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VariancePlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VariancePlot/VariancePlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VariancePlot/VariancePlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VariancePlot/VariancePlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Vistory/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Vistory/BlankPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Vistory/ScrollablePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Vistory/VistoryBlockButtons.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Vistory/VistoryDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/Vistory/VistoryToolbar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VolcanoPlot/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VolcanoPlot/VolcanoPlotDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VolcanoPlot/VolcanoPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/VolcanoPlot/VolcanoPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/InitialSetupPanel$SmoothJLabel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/InitialSetupPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/SeqMonkInformationPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/SeqMonkInformationPanel$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/SeqMonkInformationPanel$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/SeqMonkInformationPanel$4.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/SeqMonkInformationPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/SeqMonkTitlePanel$SmoothJLabel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/SeqMonkTitlePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Displays/WelcomePanel/WelcomePanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ErrorCatcher.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/BinomialFilterForRev$BinomialOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/BinomialFilterForRev.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/BoxWhiskerFilter$BoxWhiskerOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/BoxWhiskerFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilter$ChiSqareOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilter$DataStorePair.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilter$GroupMakerPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilter$GroupMakerPanel$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilter$GroupMakerPanel$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilter$GroupMakerPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilterForRev$ChiSqareOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilterForRev.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilterFrontBack$ChiSqareOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ChiSquareFilterFrontBack.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CollateListsFilter$CollateListsOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CollateListsFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CombineFilter$CombineFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CombineFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CorrelationCluster/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CorrelationCluster/CorrelationCluster.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CorrelationCluster/CorrelationClusterFilter$CorrelationFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CorrelationCluster/CorrelationClusterFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CorrelationFilter$CorrelationFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/CorrelationFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DESeqFilter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DESeqFilter/DESeqFilter$DESeqOptionsPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DESeqFilter/DESeqFilter$DESeqOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DESeqFilter/DESeqFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DESeqFilter/deseq_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DeduplicationFilter$DeduplicationFilterOptionsPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DeduplicationFilter$DeduplicationFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DeduplicationFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DifferencesFilter$DifferencesOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DifferencesFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DistributionPositionFilter$DistributionPositionFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DistributionPositionFilter$ProbeValueSorter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DistributionPositionFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/DuplicateListFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/EdgeRFilter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/EdgeRFilter/EdgeRFilter$EdgeROptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/EdgeRFilter/EdgeRFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/EdgeRFilter/EdgeRForRevFilter$EdgeRForRevOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/EdgeRFilter/EdgeRForRevFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/EdgeRFilter/edger_for_rev_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/EdgeRFilter/edger_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/FeatureFilter$FeatureFilterOptionsPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/FeatureFilter$FeatureFilterOptionsPanel$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/FeatureFilter$FeatureFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/FeatureFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/FeatureNameFilter$FeatureFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/FeatureNameFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetDisplay$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetDisplay$GeneSetTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetDisplay.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetIntensityDifferenceFilter$AverageIntensityComparator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetIntensityDifferenceFilter$DifferencesOptionsPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetIntensityDifferenceFilter$DifferencesOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetIntensityDifferenceFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/GeneSetScatterPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/ZScoreScatterPlotPanel$ProbePairValue.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/GeneSetFilter/ZScoreScatterPlotPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/IntensityDifferenceFilter$AverageIntensityComparator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/IntensityDifferenceFilter$DifferencesOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/IntensityDifferenceFilter$SingleComparison.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/IntensityDifferenceFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/IntersectListsFilter$CollateListsOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/IntersectListsFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LimmaFilter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LimmaFilter/LimmaFilter$LimmaOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LimmaFilter/LimmaFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LimmaFilter/limma_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ListAnnotationValuesFilter$ValuesFilterOptionPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ListAnnotationValuesFilter$ValuesFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ListAnnotationValuesFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/LogisticRegressionFilter$LogisticRegressionOptionsPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/LogisticRegressionFilter$LogisticRegressionOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/LogisticRegressionFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/LogisticRegressionSplicingFilter$LogisticRegressionOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/LogisticRegressionSplicingFilter$ProbePair.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/LogisticRegressionSplicingFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/LogisticRegressionFilter/logistic_regression_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ManualCorrelation/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ManualCorrelation/CorrelationProfileGraph$DataStoreDrawnPosition.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ManualCorrelation/CorrelationProfileGraph.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ManualCorrelation/ManualCorrelationFilter$CorrelationFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ManualCorrelation/ManualCorrelationFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/MonteCarloFilter$MoneteCarloOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/MonteCarloFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/OptionsListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/PositionFilter$PositionFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/PositionFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeGroupGenerator/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeGroupGenerator/ConsecutiveProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeGroupGenerator/FeatureProbeGroupGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeGroupGenerator/ProbeGroupGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeGroupGenerator/ProbeWindowGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeLengthFilter$ValuesFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeLengthFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeNameFilter$ProbeNameFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProbeNameFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProportionOfLibraryStatisticsFilter$ProportionStatsOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ProportionOfLibraryStatisticsFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/RandomFilter$RandomFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/RandomFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ReplicateSetStatsFilter$ReplicateSetOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ReplicateSetStatsFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/ClusteredSegment.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/SegmentClusteringDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/SegmentClusteringDialog$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/SegmentClusteringDialog$BoundaryGraph.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/SegmentClusteringDialog$DrawnBoundary.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/SegmentClusteringDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/SegmentationFilter$SegmentationOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/SegmentationFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/SegmentationFilter/segmentation_template.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ValuesFilter$ValuesFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/ValuesFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/Variance/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/Variance/VarianceIntensityDifferenceFilter$VarianceIntensityOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/Variance/VarianceIntensityDifferenceFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/Variance/VarianceValuesFilter$VarianceFilterOptionPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/Variance/VarianceValuesFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/WindowedDifferencesFilter$WindowedDifferencesFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/WindowedDifferencesFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/WindowedReplicateStatsFilter$WindowedReplicateOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/WindowedReplicateStatsFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/WindowedValuesFilter$WindowedValuesFilterOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Filters/WindowedValuesFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/GeneSets/
opt/SeqMonk/uk/ac/babraham/SeqMonk/GeneSets/GeneSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/GeneSets/GeneSetCollection.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/GeneSets/GeneSetCollectionParser.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/GeneSets/MappedGeneSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/ColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/ColourIndexSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/GradientFactory.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/GreyscaleColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/HotColdColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/InvertedGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/MagentaGreenColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/RGB.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/RedGreenColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/RedWhiteBlueColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/RedWhiteColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Gradients/WhiteCyanBlueRedColourGradient.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Importer/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Importer/SeqMonkImporter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/HiCSeqMonkToolbar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/MainSeqMonkToolbar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/SeqMonkMenu$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/SeqMonkMenu$FileOpener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/SeqMonkMenu.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/SeqMonkToolbar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/ToolbarPanel$ModifiedFlowLayout.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Menu/ToolbarPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/DownloadableGenomes/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/DownloadableGenomes/DownloadableGenomeSet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/DownloadableGenomes/DownloadableGenomeTreeModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/DownloadableGenomes/GenomeAssembly.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/DownloadableGenomes/GenomeAssemblySet.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/DownloadableGenomes/GenomeSpecies.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/GenomeDownloader.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/GenomeUpgrader.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Network/UpdateChecker.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/AntisenseTranscriptionPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/BisulphiteFeaturePipeline$BisulphiteOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/BisulphiteFeaturePipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/CodonBiasPipeline$CodonBiasOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/CodonBiasPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/GeneTrapQuantitationPipeline$FeatureGroup.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/GeneTrapQuantitationPipeline$GeneTrapOptionsPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/GeneTrapQuantitationPipeline$GeneTrapOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/GeneTrapQuantitationPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/IntronRegressionPipeline$IntronRegressionOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/IntronRegressionPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Options/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Options/DefinePipelineOptions.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Pipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/SplicingEfficiencyPipeline$SplicingEfficiencyOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/SplicingEfficiencyPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/ActiveTranscriptionPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/FeatureGroup.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/IntronFeatureGroup.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/RNASeqParametersModel.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/RNASeqPipeline$RNASeqOptionsPanel$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/RNASeqPipeline$RNASeqOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/Transcription/RNASeqPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/TranscriptionTerminationPipeline$TranscriptionTerminationOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/TranscriptionTerminationPipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/WigglePipeline$WiggleOptionsPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Pipelines/WigglePipeline.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/ColourScheme.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/DisplayPreferencesListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/Editor/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/Editor/DisplayPreferencesEditorDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/Editor/DisplayPreferencesEditorPanel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/Editor/NamedValueObject.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/Editor/PreferencesListCellRenderer.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Preferences/SeqMonkPreferences.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ContigProbeGenerator$SequenceReadWithCount.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ContigProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/CurrentRegionProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/DeduplicationProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/DefineProbeOptions.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/EvenCoverageProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/FeaturePercentileProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/FeatureProbeGenerator$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/FeatureProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/InterstitialProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/MacsPeakCaller.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/MergeConsecutiveProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ProbeGeneratorListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ProbeGeneratorProgressDialog$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ProbeGeneratorProgressDialog$ProgressBar.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ProbeGeneratorProgressDialog.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ProbeGeneratorUtilities.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ProbeListProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/RandomProbeGenerator.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ReadPositionProbeGenerator.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/RunningWindowProbeGenerator.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/ProbeGenerators/ShuffleListProbeGenerator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/DifferenceQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/DistanceToFeatureQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/DuplicationQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/EnrichmentNormalisationQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/EnrichmentQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/ExactOverlapQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/FourCEnrichmentQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/HiCCisTransQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/HiCPrevNextQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/HiCReadCountQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/LinearRegressionNormalisationQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/LogTransformQuantitation$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/LogTransformQuantitation$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/LogTransformQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/ManualCorrectionQuantitation$1.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/ManualCorrectionQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/MatchDistributionsQuantitation$DataIndexValueSorter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/MatchDistributionsQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/Options/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/Options/DefineQuantitationOptions.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/PerProbeNormalisationQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/PercentileNormalisationQuantitation$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/PercentileNormalisationQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/ProbeLengthQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/Quantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/RankQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/ReadCountQuantitation$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/ReadCountQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/RelativeQuantitation$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/RelativeQuantitation$2.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/RelativeQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/SizeFactorNormalisationQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/SmoothingQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/SubsetNormalisationQuantitation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Quantitation/ZScoreQuantitation.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/R/RScriptRunner.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/R/RVersionTest.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/AnnotatedProbeReport$ProbeAnnotation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/AnnotatedProbeReport.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/DataStoreSummaryReport$StoreSummary.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/DataStoreSummaryReport.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/FeatureReport$AnnotationTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/FeatureReport$FeatureAnnotation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/FeatureReport.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/Interaction/
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/Interaction/AnnotatedInteractionReport.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/Interaction/InteractionReport.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/ProbeGroupReport$AnnotationTableModel.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/ProbeGroupReport$ProbeGroupAnnotation.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/ProbeGroupReport.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/Report$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Reports/Report.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Resources/datagroup_
Slackware package /usr/src/slapt-src/academic/SeqMonk/SeqMonk-1.47.1-x86_64-1salix15.0.txz created.

Installing package SeqMonk-1.47.1-x86_64-1salix15.0...
| SeqMonk (A Mapped Sequence Analysis tool)
| 
| SeqMonk is a tool for viewing and analysing mapped sequence data.
| It was initially written to cope with remapping experiment data
| from next generation sequencers, but could be applied to any
| dataset consisting of a series of mapped genomic regions. The
| program allows you to visualise the positions of your mapped
| regions against an annotated genome and to quantify the data in
| order to make comparisons between data sets.
| 
| https://www.bioinformatics.babraham.ac.uk/projects/seqmonk/
| 
| 
Monk/Resources/probelist_icon.svg
opt/SeqMonk/uk/ac/babraham/SeqMonk/Resources/replicate_set_icon.png
opt/SeqMonk/uk/ac/babraham/SeqMonk/Resources/replicate_set_icon.svg
opt/SeqMonk/uk/ac/babraham/SeqMonk/Resources/sad_monk.svg
opt/SeqMonk/uk/ac/babraham/SeqMonk/Resources/sad_monk100.png
opt/SeqMonk/uk/ac/babraham/SeqMonk/SeqMonkApplication$1.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/SeqMonkApplication$2.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/SeqMonkApplication$3.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/SeqMonkApplication.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/SeqMonkException.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/AxisScale.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ChromosomeNameTranslator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ChromosomeWithOffset.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/DoubleVector.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/EscapeHTML.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/Features/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/Features/FeatureMerging.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/FileFilters/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/FileFilters/BEDFileFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/FileFilters/EmbededSeqMonkFileFilter.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/FileFilters/HTMLFileFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/FileFilters/PNGFileFilter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/FileFilters/SVGFileFilter.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ImageSaver/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ImageSaver/ImageSaver.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ImageSaver/SVGGenerator$SVGGraphics.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ImageSaver/SVGGenerator.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ImageSaver/TransferrableImage.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ImageToBase64.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/LongSorter/
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/LongSorter/HiCLongComparator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/LongSorter/IntComparator.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/LongSorter/IntSorter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/LongSorter/LongSetSorter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/LongVector.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/NumberKeyListener.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/OrderPreservingJList.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/PositionFormat.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/PrefsPrinter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ReportMemoryUsage.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ShortVector.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/Templates/
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opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ThreadSafeIntCounter.class
opt/SeqMonk/uk/ac/babraham/SeqMonk/Utilities/ThreadSafeLongCounter.class
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opt/SeqMonk/uk/ac/babraham/SeqMonk/create_local_library.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/load_required_modules.r
opt/SeqMonk/uk/ac/babraham/SeqMonk/r_dependencies.r
usr/
usr/bin/
usr/doc/
usr/doc/SeqMonk-1.47.1/
usr/doc/SeqMonk-1.47.1/INSTALL.txt
usr/doc/SeqMonk-1.47.1/LICENSE
usr/doc/SeqMonk-1.47.1/LICENSE.txt
usr/doc/SeqMonk-1.47.1/NOTICE_FOR_COMMONS_MATH_CODE.txt
usr/doc/SeqMonk-1.47.1/README.md
usr/doc/SeqMonk-1.47.1/README.txt
usr/doc/SeqMonk-1.47.1/RELEASE_NOTES.txt
usr/doc/SeqMonk-1.47.1/SeqMonk.SlackBuild
usr/share/
usr/share/applications/
usr/share/applications/seqmonk.desktop
usr/share/pixmaps/
usr/share/pixmaps/seqmonk.png