The following packages will be installed: bowtie2 Fetching README... 0%100%100%100%100%100%Done Fetching bowtie2.SlackBuild... 0%100%100%100%100%100%Done Fetching bowtie2.info... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done bowtie2-2.4.5/ bowtie2-2.4.5/.github/ bowtie2-2.4.5/.github/workflows/ bowtie2-2.4.5/.github/workflows/bowtie2.yml bowtie2-2.4.5/.gitignore bowtie2-2.4.5/.gitmodules bowtie2-2.4.5/.travis.yml bowtie2-2.4.5/AUTHORS bowtie2-2.4.5/BOWTIE2_VERSION bowtie2-2.4.5/CMakeLists.txt bowtie2-2.4.5/LICENSE bowtie2-2.4.5/MANUAL bowtie2-2.4.5/MANUAL.markdown bowtie2-2.4.5/Makefile bowtie2-2.4.5/NEWS bowtie2-2.4.5/README.md bowtie2-2.4.5/TUTORIAL bowtie2-2.4.5/aligner_bt.cpp bowtie2-2.4.5/aligner_bt.h bowtie2-2.4.5/aligner_cache.cpp bowtie2-2.4.5/aligner_cache.h bowtie2-2.4.5/aligner_driver.cpp bowtie2-2.4.5/aligner_driver.h bowtie2-2.4.5/aligner_metrics.h bowtie2-2.4.5/aligner_report.h bowtie2-2.4.5/aligner_result.cpp bowtie2-2.4.5/aligner_result.h bowtie2-2.4.5/aligner_seed.cpp bowtie2-2.4.5/aligner_seed.h bowtie2-2.4.5/aligner_seed2.cpp bowtie2-2.4.5/aligner_seed2.h bowtie2-2.4.5/aligner_seed_policy.cpp bowtie2-2.4.5/aligner_seed_policy.h bowtie2-2.4.5/aligner_sw.cpp bowtie2-2.4.5/aligner_sw.h bowtie2-2.4.5/aligner_sw_common.h bowtie2-2.4.5/aligner_sw_driver.cpp bowtie2-2.4.5/aligner_sw_driver.h bowtie2-2.4.5/aligner_sw_nuc.h bowtie2-2.4.5/aligner_swsse.cpp bowtie2-2.4.5/aligner_swsse.h bowtie2-2.4.5/aligner_swsse_ee_i16.cpp bowtie2-2.4.5/aligner_swsse_ee_u8.cpp bowtie2-2.4.5/aligner_swsse_loc_i16.cpp bowtie2-2.4.5/aligner_swsse_loc_u8.cpp bowtie2-2.4.5/aln_sink.cpp bowtie2-2.4.5/aln_sink.h bowtie2-2.4.5/alphabet.cpp bowtie2-2.4.5/alphabet.h bowtie2-2.4.5/assert_helpers.h bowtie2-2.4.5/banded.cpp bowtie2-2.4.5/banded.h bowtie2-2.4.5/binary_sa_search.h bowtie2-2.4.5/bitpack.h bowtie2-2.4.5/blockwise_sa.h bowtie2-2.4.5/bowtie2 bowtie2-2.4.5/bowtie2-build bowtie2-2.4.5/bowtie2-inspect bowtie2-2.4.5/bowtie_build_main.cpp bowtie2-2.4.5/bowtie_main.cpp bowtie2-2.4.5/bt2_build.cpp bowtie2-2.4.5/bt2_dp.cpp bowtie2-2.4.5/bt2_idx.cpp bowtie2-2.4.5/bt2_idx.h bowtie2-2.4.5/bt2_inspect.cpp bowtie2-2.4.5/bt2_io.cpp bowtie2-2.4.5/bt2_locks.cpp bowtie2-2.4.5/bt2_locks.h bowtie2-2.4.5/bt2_search.cpp bowtie2-2.4.5/bt2_search.h bowtie2-2.4.5/bt2_util.cpp bowtie2-2.4.5/btypes.h bowtie2-2.4.5/ccnt_lut.cpp bowtie2-2.4.5/cpu_numa_info.cpp bowtie2-2.4.5/cpu_numa_info.h bowtie2-2.4.5/diff_sample.cpp bowtie2-2.4.5/diff_sample.h bowtie2-2.4.5/doc/ bowtie2-2.4.5/doc/README bowtie2-2.4.5/doc/images/ bowtie2-2.4.5/doc/images/bowtie_logo.png bowtie2-2.4.5/doc/images/osi-certified.gif bowtie2-2.4.5/doc/images/sflogo.png bowtie2-2.4.5/doc/images/university.small.horizontal.white.png bowtie2-2.4.5/doc/manual.html bowtie2-2.4.5/doc/release.txt bowtie2-2.4.5/doc/style.css bowtie2-2.4.5/doc/website/ bowtie2-2.4.5/doc/website/faq.shtml bowtie2-2.4.5/doc/website/faq.ssi bowtie2-2.4.5/doc/website/foot.ssi bowtie2-2.4.5/doc/website/index.html bowtie2-2.4.5/doc/website/index.shtml bowtie2-2.4.5/doc/website/manual.shtml bowtie2-2.4.5/doc/website/manual.ssi bowtie2-2.4.5/doc/website/news.shtml bowtie2-2.4.5/doc/website/old_news.ssi bowtie2-2.4.5/doc/website/other_tools.shtml bowtie2-2.4.5/doc/website/push.sh bowtie2-2.4.5/doc/website/push_images.sh bowtie2-2.4.5/doc/website/recent_news.ssi bowtie2-2.4.5/doc/website/rhsidebar.ssi bowtie2-2.4.5/doc/website/top.ssi bowtie2-2.4.5/dp_framer.cpp bowtie2-2.4.5/dp_framer.h bowtie2-2.4.5/ds.cpp bowtie2-2.4.5/ds.h bowtie2-2.4.5/edit.cpp bowtie2-2.4.5/edit.h bowtie2-2.4.5/endian_swap.h bowtie2-2.4.5/example/ bowtie2-2.4.5/example/index/ bowtie2-2.4.5/example/index/lambda_virus.1.bt2 bowtie2-2.4.5/example/index/lambda_virus.2.bt2 bowtie2-2.4.5/example/index/lambda_virus.3.bt2 bowtie2-2.4.5/example/index/lambda_virus.4.bt2 bowtie2-2.4.5/example/index/lambda_virus.rev.1.bt2 bowtie2-2.4.5/example/index/lambda_virus.rev.2.bt2 bowtie2-2.4.5/example/reads/ bowtie2-2.4.5/example/reads/combined_reads.bam bowtie2-2.4.5/example/reads/conversion_utilities.sh bowtie2-2.4.5/example/reads/longreads.fq bowtie2-2.4.5/example/reads/reads_1.fq bowtie2-2.4.5/example/reads/reads_2.fq bowtie2-2.4.5/example/reads/simulate.pl bowtie2-2.4.5/example/reference/ bowtie2-2.4.5/example/reference/lambda_virus.fa bowtie2-2.4.5/fast_mutex.h bowtie2-2.4.5/filebuf.h bowtie2-2.4.5/formats.h bowtie2-2.4.5/group_walk.cpp bowtie2-2.4.5/group_walk.h bowtie2-2.4.5/ival_list.cpp bowtie2-2.4.5/ival_list.h bowtie2-2.4.5/limit.cpp bowtie2-2.4.5/limit.h bowtie2-2.4.5/ls.cpp bowtie2-2.4.5/ls.h bowtie2-2.4.5/mask.cpp bowtie2-2.4.5/mask.h bowtie2-2.4.5/mem_ids.h bowtie2-2.4.5/mm.h bowtie2-2.4.5/multikey_qsort.cpp bowtie2-2.4.5/multikey_qsort.h bowtie2-2.4.5/opts.h bowtie2-2.4.5/outq.cpp bowtie2-2.4.5/outq.h bowtie2-2.4.5/pat.cpp bowtie2-2.4.5/pat.h bowtie2-2.4.5/pe.cpp bowtie2-2.4.5/pe.h bowtie2-2.4.5/presets.cpp bowtie2-2.4.5/presets.h bowtie2-2.4.5/processor_support.h bowtie2-2.4.5/qual.cpp bowtie2-2.4.5/qual.h bowtie2-2.4.5/random_source.cpp bowtie2-2.4.5/random_source.h bowtie2-2.4.5/random_util.cpp bowtie2-2.4.5/random_util.h bowtie2-2.4.5/read.h bowtie2-2.4.5/read_qseq.cpp bowtie2-2.4.5/ref_coord.cpp bowtie2-2.4.5/ref_coord.h bowtie2-2.4.5/ref_read.cpp bowtie2-2.4.5/ref_read.h bowtie2-2.4.5/reference.cpp bowtie2-2.4.5/reference.h bowtie2-2.4.5/sam.cpp bowtie2-2.4.5/sam.h bowtie2-2.4.5/scoring.cpp bowtie2-2.4.5/scoring.h bowtie2-2.4.5/scripts/ bowtie2-2.4.5/scripts/bowtie2-hbb.sh bowtie2-2.4.5/scripts/convert_quals.pl bowtie2-2.4.5/scripts/gen_2b_occ_lookup.pl bowtie2-2.4.5/scripts/gen_occ_lookup.pl bowtie2-2.4.5/scripts/gen_solqual_lookup.pl bowtie2-2.4.5/scripts/infer_fraglen.pl bowtie2-2.4.5/scripts/make_a_thaliana_tair.sh bowtie2-2.4.5/scripts/make_b_taurus_UMD3.sh bowtie2-2.4.5/scripts/make_c_elegans.sh bowtie2-2.4.5/scripts/make_canFam2.sh bowtie2-2.4.5/scripts/make_d_melanogaster.sh bowtie2-2.4.5/scripts/make_e_coli.sh bowtie2-2.4.5/scripts/make_h_sapiens_ncbi36.sh bowtie2-2.4.5/scripts/make_h_sapiens_ncbi37.sh bowtie2-2.4.5/scripts/make_hg18.sh bowtie2-2.4.5/scripts/make_hg19.sh bowtie2-2.4.5/scripts/make_m_musculus_ncbi37.sh bowtie2-2.4.5/scripts/make_mm10.sh bowtie2-2.4.5/scripts/make_mm9.sh bowtie2-2.4.5/scripts/make_rn4.sh bowtie2-2.4.5/scripts/make_s_cerevisiae.sh bowtie2-2.4.5/scripts/sa.py bowtie2-2.4.5/scripts/sim/ bowtie2-2.4.5/scripts/sim/AlignmentCheck.pm bowtie2-2.4.5/scripts/sim/DNA.pm bowtie2-2.4.5/scripts/sim/Mutate.pm bowtie2-2.4.5/scripts/sim/RandDNA.pm bowtie2-2.4.5/scripts/sim/SampleRead.pm bowtie2-2.4.5/scripts/sim/Sim.pm bowtie2-2.4.5/scripts/sim/Test.pm bowtie2-2.4.5/scripts/sim/contrib/ bowtie2-2.4.5/scripts/sim/contrib/ForkManager.pm bowtie2-2.4.5/scripts/sim/run.pl bowtie2-2.4.5/scripts/sim/run.sh bowtie2-2.4.5/scripts/sim/unit.sh bowtie2-2.4.5/scripts/test/ bowtie2-2.4.5/scripts/test/.gitignore bowtie2-2.4.5/scripts/test/DNA.pm bowtie2-2.4.5/scripts/test/README.md bowtie2-2.4.5/scripts/test/benchmark/ bowtie2-2.4.5/scripts/test/benchmark/benchmarks.py bowtie2-2.4.5/scripts/test/benchmark/data/ bowtie2-2.4.5/scripts/test/benchmark/data/conf/ bowtie2-2.4.5/scripts/test/benchmark/data/conf/acc.json bowtie2-2.4.5/scripts/test/benchmark/data/conf/seta.bench bowtie2-2.4.5/scripts/test/benchmark/data/conf/speed.json bowtie2-2.4.5/scripts/test/benchmark/run.py bowtie2-2.4.5/scripts/test/benchmark/samreader.py bowtie2-2.4.5/scripts/test/big_data/ bowtie2-2.4.5/scripts/test/big_data/reads/ bowtie2-2.4.5/scripts/test/big_data/reads/human_reads.fa bowtie2-2.4.5/scripts/test/big_data/reads/mouse_reads.fa bowtie2-2.4.5/scripts/test/bt2face.py bowtie2-2.4.5/scripts/test/btdata.py bowtie2-2.4.5/scripts/test/dataface.py bowtie2-2.4.5/scripts/test/large_idx.py bowtie2-2.4.5/scripts/test/regressions.py bowtie2-2.4.5/scripts/test/simple_tests.pl bowtie2-2.4.5/scripts/test/simple_tests.sh bowtie2-2.4.5/search_globals.h bowtie2-2.4.5/sequence_io.h bowtie2-2.4.5/shmem.cpp bowtie2-2.4.5/shmem.h bowtie2-2.4.5/simple_func.cpp bowtie2-2.4.5/simple_func.h bowtie2-2.4.5/sse_util.cpp bowtie2-2.4.5/sse_util.h bowtie2-2.4.5/sse_wrap.h bowtie2-2.4.5/sstring.cpp bowtie2-2.4.5/sstring.h bowtie2-2.4.5/str_util.h bowtie2-2.4.5/third_party/ bowtie2-2.4.5/third_party/cpuid.h bowtie2-2.4.5/third_party/simde/ bowtie2-2.4.5/threading.h bowtie2-2.4.5/threadpool.h bowtie2-2.4.5/timer.h bowtie2-2.4.5/tokenize.h bowtie2-2.4.5/unique.cpp bowtie2-2.4.5/unique.h bowtie2-2.4.5/util.h bowtie2-2.4.5/word_io.h bowtie2-2.4.5/zbox.h bowtie2-2.4.5/zstd_decompress.cpp bowtie2-2.4.5/zstd_decompress.h g++ -O3 -msse2 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -msse2 -funroll-loops -g3 -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -I third_party \ -o bowtie2-build-s bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -lpthread -lz g++ -O3 -msse2 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -msse2 -funroll-loops -g3 -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ -I third_party \ -o bowtie2-build-l bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -lpthread -lz g++ -O3 -msse2 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -msse2 -funroll-loops -g3 -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -I third_party \ -o bowtie2-align-s bt2_search.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \ -lpthread -lz aligner_seed2.cpp: In member function ‘size_t Descent::recalcOutgoing(const Read&, const Scoring&, TAlScore, TAlScore, DescentRedundancyChecker&, EFactory&, const EList&, const EList&, PerReadMetrics&)’: aligner_seed2.cpp:585:21: warning: ‘edge.DescentEdge::nex’ may be used uninitialized [-Wmaybe-uninitialized] 585 | DescentEdge edge; | ^~~~ g++ -O3 -msse2 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -msse2 -funroll-loops -g3 -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ -I third_party \ -o bowtie2-align-l bt2_search.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \ -lpthread -lz g++ -O3 -msse2 -funroll-loops -g3 \ -DCOMPILER_OPTIONS="\"-O3 -msse2 -funroll-loops -g3 -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_INSPECT_MAIN -Wall \ -I third_party \ -o bowtie2-inspect-s bt2_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp \ -lpthread -lz g++ -O3 -msse2 -funroll-loops -g3 \ -DCOMPILER_OPTIONS="\"-O3 -msse2 -funroll-loops -g3 -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_INSPECT_MAIN -DBOWTIE_64BIT_INDEX -Wall \ -I third_party \ -o bowtie2-inspect-l bt2_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp \ -lpthread -lz Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/bowtie2/bowtie2-2.4.5-x86_64-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/bowtie2 usr/bin/bowtie2-align-l usr/bin/bowtie2-align-s usr/bin/bowtie2-build usr/bin/bowtie2-build-l usr/bin/bowtie2-build-s usr/bin/bowtie2-inspect usr/bin/bowtie2-inspect-l usr/bin/bowtie2-inspect-s usr/doc/ usr/doc/bowtie2-2.4.5/ usr/doc/bowtie2-2.4.5/AUTHORS usr/doc/bowtie2-2.4.5/BOWTIE2_VERSION usr/doc/bowtie2-2.4.5/LICENSE usr/doc/bowtie2-2.4.5/MANUAL usr/doc/bowtie2-2.4.5/NEWS usr/doc/bowtie2-2.4.5/TUTORIAL usr/doc/bowtie2-2.4.5/bowtie2.SlackBuild usr/doc/bowtie2-2.4.5/doc/ usr/doc/bowtie2-2.4.5/doc/README usr/doc/bowtie2-2.4.5/doc/images/ usr/doc/bowtie2-2.4.5/doc/images/bowtie_logo.png usr/doc/bowtie2-2.4.5/doc/images/osi-certified.gif usr/doc/bowtie2-2.4.5/doc/images/sflogo.png 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usr/share/bowtie2/scripts/sim/Sim.pm usr/share/bowtie2/scripts/sim/Test.pm usr/share/bowtie2/scripts/sim/contrib/ usr/share/bowtie2/scripts/sim/contrib/ForkManager.pm usr/share/bowtie2/scripts/sim/run.pl usr/share/bowtie2/scripts/sim/run.sh usr/share/bowtie2/scripts/sim/unit.sh usr/share/bowtie2/scripts/test/ usr/share/bowtie2/scripts/test/.gitignore usr/share/bowtie2/scripts/test/DNA.pm usr/share/bowtie2/scripts/test/README.md usr/share/bowtie2/scripts/test/benchmark/ usr/share/bowtie2/scripts/test/benchmark/benchmarks.py usr/share/bowtie2/scripts/test/benchmark/data/ usr/share/bowtie2/scripts/test/benchmark/data/conf/ usr/share/bowtie2/scripts/test/benchmark/data/conf/acc.json usr/share/bowtie2/scripts/test/benchmark/data/conf/seta.bench usr/share/bowtie2/scripts/test/benchmark/data/conf/speed.json usr/share/bowtie2/scripts/test/benchmark/run.py usr/share/bowtie2/scripts/test/benchmark/samreader.py usr/share/bowtie2/scripts/test/big_data/ usr/share/bowtie2/scripts/test/big_data/reads/ usr/share/bowtie2/scripts/test/big_data/reads/human_reads.fa usr/share/bowtie2/scripts/test/big_data/reads/mouse_reads.fa usr/share/bowtie2/scripts/test/bt2face.py usr/share/bowtie2/scripts/test/btdata.py usr/share/bowtie2/scripts/test/dataface.py usr/share/bowtie2/scripts/test/large_idx.py usr/share/bowtie2/scripts/test/regressions.py usr/share/bowtie2/scripts/test/simple_tests.pl usr/share/bowtie2/scripts/test/simple_tests.sh Slackware package /usr/src/slapt-src/academic/bowtie2/bowtie2-2.4.5-x86_64-1salix15.0.txz created. Installing package bowtie2-2.4.5-x86_64-1salix15.0... | bowtie2 (A tool for aligning sequencing reads) | | Bowtie 2 is an ultrafast and memory-efficient tool for aligning | sequencing reads to long reference sequences. It is particularly | good at aligning reads of about 50 up to 100s or 1,000s of | characters, and particularly good at aligning to relatively long | (e.g. mammalian) genomes. | | Home: https://bowtie-bio.sf.net/bowtie2 | Reference: Langmead B, Salzberg S. Fast gapped-read alignment with | Bowtie 2. Nature Methods. 2012, 9:357-359. | |