CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at 7zC/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at zlib/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. zCrc.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zCrc.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zCrcOpt.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zDec.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zFile.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zFile.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zStream.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zTypes.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/7zVersion.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/Bcj2.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/Bcj2.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/Bra.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/Bra.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/Bra86.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/7zC/BraIA64.c 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clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/README.md clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/builddb.sh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/ clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/CLARK_hh.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FILEex.cpp clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FILEex.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FileHandler.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FileHandler.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FileHandlerA.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FileHandlerA.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FileHandlerQ.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/FileHandlerQ.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/HashTableStorage_hh.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/HashTop.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/RingBuffer.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/analyser.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/analyser.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/contiguousToSpaced_hh.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/dataType.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/file.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/file.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/getAbundance.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/getAccssnTaxID.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/getConfidencedensity.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/getGammadensity.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/getSeqVirFiles.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/getTargetsDef.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/getfilesToTaxNodes.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/hashTable_hh.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/kmersConversion.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/kmersConversion.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/main.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/main_spaced.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/makeSamplesSummaryTables.cc clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/parameters.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/parameters_hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/parameters_shh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/spacedKmer.hh clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/ clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/CMakeLists.txt clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/adler32.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/compress.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/crc32.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/crc32.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/deflate.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/deflate.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/gzio.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/infback.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/inffast.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/inffast.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/inffixed.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/inflate.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/inflate.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/inftrees.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/inftrees.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/minigzip.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/trees.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/trees.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/uncompr.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/zconf.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/zlib.h clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/zutil.c clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/zlib/zutil.h -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done -- Build files have been written to: /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/build [ 1%] Building C object zlib/CMakeFiles/z.dir/adler32.c.o [ 2%] Building C object zlib/CMakeFiles/z.dir/compress.c.o [ 3%] Building C object 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CMakeFiles/getfilesToTaxNodes.dir/src/file.cc.o [ 41%] Linking CXX executable ../bin/getfilesToTaxNodes [ 41%] Built target getfilesToTaxNodes [ 42%] Building CXX object CMakeFiles/getAbundance.dir/src/getAbundance.cc.o [ 43%] Building CXX object CMakeFiles/getAbundance.dir/src/file.cc.o [ 44%] Linking CXX executable ../bin/getAbundance [ 44%] Built target getAbundance [ 46%] Building CXX object CMakeFiles/getConfidenceDensity.dir/src/getConfidencedensity.cc.o [ 47%] Building CXX object CMakeFiles/getConfidenceDensity.dir/src/file.cc.o [ 48%] Linking CXX executable ../bin/getConfidenceDensity [ 48%] Built target getConfidenceDensity [ 49%] Building CXX object CMakeFiles/getGammaDensity.dir/src/getGammadensity.cc.o [ 50%] Building CXX object CMakeFiles/getGammaDensity.dir/src/file.cc.o [ 51%] Linking CXX executable ../bin/getGammaDensity [ 51%] Built target getGammaDensity [ 52%] Building CXX object CMakeFiles/CLARK.dir/src/main.cc.o In file included from /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/./CLARK_hh.hh:38, from /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/main.cc:35: /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/././HashTableStorage_hh.hh: In member function ‘bool EHashtable::clear()’: /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/././HashTableStorage_hh.hh:507:1: warning: no return statement in function returning non-void [-Wreturn-type] 507 | } | ^ [ 53%] Building CXX object CMakeFiles/CLARK.dir/src/analyser.cc.o [ 55%] Building CXX object CMakeFiles/CLARK.dir/src/file.cc.o [ 56%] Building CXX object CMakeFiles/CLARK.dir/src/kmersConversion.cc.o [ 57%] Building CXX object CMakeFiles/CLARK.dir/src/FileHandler.cc.o [ 58%] Building CXX object CMakeFiles/CLARK.dir/src/FileHandlerA.cc.o [ 59%] Building CXX object CMakeFiles/CLARK.dir/src/FileHandlerQ.cc.o [ 60%] Building CXX object CMakeFiles/CLARK.dir/src/FILEex.cpp.o [ 61%] Linking CXX executable ../bin/CLARK [ 61%] Built target CLARK [ 62%] Building CXX object CMakeFiles/getTargetsDef.dir/src/getTargetsDef.cc.o [ 64%] Building CXX object CMakeFiles/getTargetsDef.dir/src/file.cc.o [ 65%] Linking CXX executable ../bin/getTargetsDef [ 65%] Built target getTargetsDef [ 66%] Building CXX object CMakeFiles/makeSummaryTables.dir/src/file.cc.o [ 67%] Building CXX object CMakeFiles/makeSummaryTables.dir/src/makeSamplesSummaryTables.cc.o [ 68%] Linking CXX executable ../bin/makeSummaryTables [ 68%] Built target makeSummaryTables [ 69%] Building CXX object CMakeFiles/converter.dir/src/main_spaced.cc.o [ 70%] Building CXX object CMakeFiles/converter.dir/src/kmersConversion.cc.o [ 71%] Linking CXX executable ../bin/converter [ 71%] Built target converter [ 73%] Building CXX object CMakeFiles/CLARK-l.dir/src/main.cc.o In file included from /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/./CLARK_hh.hh:38, from /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/main.cc:35: /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/././HashTableStorage_hh.hh: In member function ‘bool EHashtable::clear()’: /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/././HashTableStorage_hh.hh:507:1: warning: no return statement in function returning non-void [-Wreturn-type] 507 | } | ^ [ 74%] Building CXX object CMakeFiles/CLARK-l.dir/src/analyser.cc.o [ 75%] Building CXX object CMakeFiles/CLARK-l.dir/src/file.cc.o [ 76%] Building CXX object CMakeFiles/CLARK-l.dir/src/kmersConversion.cc.o [ 77%] Building CXX object CMakeFiles/CLARK-l.dir/src/FileHandler.cc.o [ 78%] Building CXX object CMakeFiles/CLARK-l.dir/src/FileHandlerA.cc.o [ 79%] Building CXX object CMakeFiles/CLARK-l.dir/src/FileHandlerQ.cc.o [ 80%] Building CXX object CMakeFiles/CLARK-l.dir/src/FILEex.cpp.o [ 82%] Linking CXX executable ../bin/CLARK-l [ 82%] Built target CLARK-l [ 83%] Building CXX object CMakeFiles/exeSeq.dir/src/getSeqVirFiles.cc.o [ 84%] Building CXX object CMakeFiles/exeSeq.dir/src/file.cc.o [ 85%] Linking CXX executable ../bin/exeSeq [ 85%] Built target exeSeq [ 86%] Building CXX object CMakeFiles/getAccssnTaxID.dir/src/getAccssnTaxID.cc.o [ 87%] Building CXX object CMakeFiles/getAccssnTaxID.dir/src/file.cc.o [ 88%] Building CXX object CMakeFiles/getAccssnTaxID.dir/src/FILEex.cpp.o [ 89%] Linking CXX executable ../bin/getAccssnTaxID [ 89%] Built target getAccssnTaxID [ 91%] Building CXX object CMakeFiles/CLARK-S.dir/src/main.cc.o In file included from /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/./CLARK_hh.hh:38, from /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/main.cc:35: /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/././HashTableStorage_hh.hh: In member function ‘bool EHashtable::clear()’: /usr/src/slapt-src/academic/clark-ugene/clark-6917bf93df9a8c2b80155db367f6672c1b143d9b/src/././HashTableStorage_hh.hh:507:1: warning: no return statement in function returning non-void [-Wreturn-type] 507 | } | ^ [ 92%] Building CXX object CMakeFiles/CLARK-S.dir/src/analyser.cc.o [ 93%] Building CXX object CMakeFiles/CLARK-S.dir/src/file.cc.o [ 94%] Building CXX object CMakeFiles/CLARK-S.dir/src/kmersConversion.cc.o [ 95%] Building CXX object CMakeFiles/CLARK-S.dir/src/FileHandler.cc.o [ 96%] Building CXX object CMakeFiles/CLARK-S.dir/src/FileHandlerA.cc.o [ 97%] Building CXX object CMakeFiles/CLARK-S.dir/src/FileHandlerQ.cc.o [ 98%] Building CXX object CMakeFiles/CLARK-S.dir/src/FILEex.cpp.o [100%] Linking CXX executable ../bin/CLARK-S [100%] Built target CLARK-S Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/clark-ugene/clark-ugene-git_6917bf9-x86_64-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/CLARK usr/bin/CLARK-S usr/bin/CLARK-l usr/bin/builddb.sh usr/bin/converter usr/bin/exeSeq usr/bin/getAbundance usr/bin/getAccssnTaxID usr/bin/getConfidenceDensity usr/bin/getGammaDensity usr/bin/getTargetsDef usr/bin/getfilesToTaxNodes usr/bin/makeSummaryTables usr/doc/ usr/doc/clark-ugene-git_6917bf9/ usr/doc/clark-ugene-git_6917bf9/README.md usr/doc/clark-ugene-git_6917bf9/clark-ugene.SlackBuild Slackware package /usr/src/slapt-src/academic/clark-ugene/clark-ugene-git_6917bf9-x86_64-1salix15.0.txz created. Installing package clark-ugene-git_6917bf9-x86_64-1salix15.0... | clark-ugene (Ugene's forked CLAssifier based on Reduced K-mers) | | CLARK is a novel method for supervised sequence classification based | on discriminative k-mers. Somewhat unique among other metagenomic | and genomic classification methods, CLARK provides a confidence | score for its assignments which can be used in downstream analysis. | | Home: https://github.com/ugeneunipro/clark | | This is Ugene's (http://ugene.net/) fork of the CLARK tool | (http://clark.cs.ucr.edu/) | |