MetaPhlAn2: MetaPhlAn2 (Metagenomic Phylogenetic Analysis) MetaPhlAn2: MetaPhlAn2: MetaPhlAn is a computational tool for profiling the composition of MetaPhlAn2: microbial communities from metagenomic shotgun sequencing data. MetaPhlAn2: MetaPhlAn relies on unique clade-specific marker genes identified MetaPhlAn2: from ~17,000 reference genomes (~13,500 bacterial and archaeal, MetaPhlAn2: ~3,500 viral, and ~110 eukaryotic). MetaPhlAn2: MetaPhlAn2: http://huttenhower.sph.harvard.edu/metaphlan2 MetaPhlAn2: https://bitbucket.org/biobakery/metaphlan2/ MetaPhlAn2: