RepeatMasker: RepeatMasker (Screen DNA sequence for interspersed repeats) RepeatMasker: RepeatMasker: RepeatMasker is a program that screens DNA sequences for inter- RepeatMasker: spersed repeats and low complexity DNA sequences. The output of RepeatMasker: the program is a detailed annotation of the repeats that are RepeatMasker: present in the query sequence as well as a modified version of RepeatMasker: the query sequence in which all the annotated repeats have been RepeatMasker: masked (default: replaced by Ns). RepeatMasker: RepeatMasker: Home: http://www.repeatmasker.org/ RepeatMasker: